View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_5 (Length: 455)
Name: NF3005_low_5
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 22159174 - 22158885
Alignment:
| Q |
13 |
cagagacaaagttgaatgagaagagtacatgcacatgatgttttctccatttagaccactttccaagtaacataggaggaagcaagataagtgaacacga |
112 |
Q |
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| T |
22159174 |
cagagacaaagttgaatgagaagagtacatgcacatgatgttttctccatttagaccactttccaag--------gaggaagcaagataagtgaacacga |
22159083 |
T |
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| Q |
113 |
ttcaattttatgtgagattagatctaaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacacgtgattggtgacgt |
212 |
Q |
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|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
22159082 |
ttcaatttgatgtgagattagatctcaaatgtaagcatagtaatgtttgagataataatgaattaattatagtccacgttggacatgtgattggtaacgt |
22158983 |
T |
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| Q |
213 |
tgtaatggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttcttcatttgcattgtaagtgtctatctt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
22158982 |
tgtaatggtccctttttgttctcttcctcatgtttcttatcacttatatatttggtaatattacaagtttctacatttgcattgtaaatgtctatctt |
22158885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 325 - 455
Target Start/End: Complemental strand, 22158808 - 22158678
Alignment:
| Q |
325 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaacctaactacat |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
22158808 |
taaattataatggaaatctaagattggaagacttgaaaatggtcaaaaattatgcatcaaacttcatttattatttttgtaattcctaatctaactacat |
22158709 |
T |
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| Q |
425 |
gtgatttgatatccatctatctatctagata |
455 |
Q |
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||||||||||||| ||||||||||||||||| |
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| T |
22158708 |
gtgatttgatatctatctatctatctagata |
22158678 |
T |
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