View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3005_low_6 (Length: 341)

Name: NF3005_low_6
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3005_low_6
NF3005_low_6
[»] chr6 (3 HSPs)
chr6 (17-322)||(5693315-5693623)
chr6 (269-310)||(20744162-20744203)
chr6 (270-310)||(23629834-23629874)
[»] scaffold0122 (1 HSPs)
scaffold0122 (269-311)||(14182-14224)
[»] chr3 (4 HSPs)
chr3 (269-315)||(46093135-46093181)
chr3 (269-315)||(12131669-12131715)
chr3 (288-318)||(39100099-39100129)
chr3 (271-311)||(20612275-20612315)
[»] chr5 (3 HSPs)
chr5 (263-315)||(32760529-32760581)
chr5 (274-310)||(30893957-30893993)
chr5 (263-311)||(31602815-31602863)
[»] chr2 (5 HSPs)
chr2 (280-315)||(6228653-6228688)
chr2 (269-312)||(29896290-29896333)
chr2 (272-310)||(22608551-22608589)
chr2 (269-310)||(9547405-9547446)
chr2 (269-310)||(29734715-29734756)
[»] chr8 (2 HSPs)
chr8 (269-310)||(26991753-26991794)
chr8 (274-310)||(498755-498791)
[»] chr7 (2 HSPs)
chr7 (269-310)||(10026018-10026059)
chr7 (269-310)||(21580840-21580881)
[»] chr4 (3 HSPs)
chr4 (269-310)||(22630356-22630397)
chr4 (269-310)||(37930843-37930884)
chr4 (272-312)||(3299093-3299133)
[»] chr1 (2 HSPs)
chr1 (269-310)||(6267435-6267476)
chr1 (270-310)||(22335382-22335422)


Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 5693315 - 5693623
Alignment:
Q  17 tccataactacactcaaaggcagatagcttaagatcaaaaactatgtaaatgggctttgaaggaaagcgaggatgaactctattagcttaagatccacgt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5693315 tccataactacactcaaaggcagatagcttaagatcaaaaactatgtaaatgggctttgaaggaaagcgaggatgaactctattagcttaagatccacgt 5693414  T
Q  117 gaaaggcaaaagctgagtgcgcctttattggtgtgcacagtgaaagaaaatgaaaataatag-nnnnnnnnnnnnccactcaaaaaagtgaaagttgtct 215  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||             |||||||||||||||||||||||||    
T  5693415 gaaaggcaaaagctgagtgcgcctttattggtgtgcacagcgaaagaaaatgaaaataatagtttttttttttttccactcaaaaaagtgaaagttgtct 5693514  T
Q  216 ttctttactcnnnnnnnttaaagttgaatcattttagtcg--nnnnnnngtggcagtcggggtttcaaccacataccttgcatatattatgcattgttta 313  Q
    ||||||||||       |||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5693515 ttctttactcaaaaaaattaaagttgaatcattttagtcgtttttttttgtggcagtcggggtttcaaccacataccttgcatatattatgcattgttta 5693614  T
Q  314 taacagcta 322  Q
    |||||||||    
T  5693615 taacagcta 5693623  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 20744203 - 20744162
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  20744203 gtcggggtttgaaccccagaccttgcatatattatgcattgt 20744162  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 23629834 - 23629874
Alignment:
Q  270 tcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    ||||||||| |||  ||||||||||||||||||||||||||    
T  23629834 tcggggtttgaacttcataccttgcatatattatgcattgt 23629874  T

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Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 311
Target Start/End: Original strand, 14182 - 14224
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgtt 311  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  14182 gtcggggtttgaaccacataccttgcatatattatgcattgtt 14224  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 269 - 315
Target Start/End: Complemental strand, 46093181 - 46093135
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgtttata 315  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  46093181 gtcggggtttaaaccacaaaccttgcatatattatgcattgtttata 46093135  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 315
Target Start/End: Original strand, 12131669 - 12131715
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgtttata 315  Q
    |||||||||| |||| ||||||||| |||||||||||||||| ||||    
T  12131669 gtcggggtttaaacctcataccttgtatatattatgcattgtctata 12131715  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 39100099 - 39100129
Alignment:
Q  288 accttgcatatattatgcattgtttataaca 318  Q
    |||||||||||||||||||||||||||||||    
T  39100099 accttgcatatattatgcattgtttataaca 39100129  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 20612275 - 20612315
Alignment:
Q  271 cggggtttcaaccacataccttgcatatattatgcattgtt 311  Q
    |||||||| |||| || ||||||||||||||||||||||||    
T  20612275 cggggtttgaaccccaaaccttgcatatattatgcattgtt 20612315  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 32760581 - 32760529
Alignment:
Q  263 gtggcagtcggggtttcaaccacataccttgcatatattatgcattgtttata 315  Q
    |||| ||||||||||| ||||||| |||||||||||  |||||||||||||||    
T  32760581 gtggtagtcggggtttgaaccacagaccttgcatattctatgcattgtttata 32760529  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 30893993 - 30893957
Alignment:
Q  274 ggtttcaaccacataccttgcatatattatgcattgt 310  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  30893993 ggtttgaacctcataccttgcatatattatgcattgt 30893957  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 31602815 - 31602863
Alignment:
Q  263 gtggcagtcggggtttcaaccacataccttgcatatattatgcattgtt 311  Q
    |||||||||||||||| || | |  ||||||||||||||||||||||||    
T  31602815 gtggcagtcggggtttgaatctcgaaccttgcatatattatgcattgtt 31602863  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 315
Target Start/End: Complemental strand, 6228688 - 6228653
Alignment:
Q  280 aaccacataccttgcatatattatgcattgtttata 315  Q
    |||| |||||||||||||||||||||||||||||||    
T  6228688 aacctcataccttgcatatattatgcattgtttata 6228653  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 269 - 312
Target Start/End: Original strand, 29896290 - 29896333
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgttt 312  Q
    |||||||||| |||| || |||||||||||||||||||||||||    
T  29896290 gtcggggtttgaaccccaaaccttgcatatattatgcattgttt 29896333  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 310
Target Start/End: Complemental strand, 22608589 - 22608551
Alignment:
Q  272 ggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    ||||||| |||| ||||||||||||||||||||||||||    
T  22608589 ggggtttgaacctcataccttgcatatattatgcattgt 22608551  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 9547405 - 9547446
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  9547405 gtcggggtttgaaccccaaaccttgcatatattatgcattgt 9547446  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 29734756 - 29734715
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| ||||||  |||||||||||||||||||||||    
T  29734756 gtcggggtttgaaccacggaccttgcatatattatgcattgt 29734715  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 26991753 - 26991794
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||| ||||| ||||||| |||||||||||||||||||||||    
T  26991753 gtcgtggtttgaaccacaaaccttgcatatattatgcattgt 26991794  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 498791 - 498755
Alignment:
Q  274 ggtttcaaccacataccttgcatatattatgcattgt 310  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  498791 ggtttaaaccacagaccttgcatatattatgcattgt 498755  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 10026059 - 10026018
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| |||| |||||||||||||| |||||||||||    
T  10026059 gtcggggtttgaaccccataccttgcatattttatgcattgt 10026018  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 21580881 - 21580840
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| ||||| ||||||| |||||||||||||||||    
T  21580881 gtcggggtttgaaccatataccttacatatattatgcattgt 21580840  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 22630356 - 22630397
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  22630356 gtcggggtttgaacctcagaccttgcatatattatgcattgt 22630397  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 37930843 - 37930884
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| |||| || |||||||||||||||||||||||    
T  37930843 gtcggggtttgaacctcagaccttgcatatattatgcattgt 37930884  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 312
Target Start/End: Original strand, 3299093 - 3299133
Alignment:
Q  272 ggggtttcaaccacataccttgcatatattatgcattgttt 312  Q
    ||||||| |||| || |||||||||||||||||||||||||    
T  3299093 ggggtttgaacctcaaaccttgcatatattatgcattgttt 3299133  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 6267435 - 6267476
Alignment:
Q  269 gtcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    |||||||||| ||||||||| ||||||||| |||||||||||    
T  6267435 gtcggggtttgaaccacatatcttgcatattttatgcattgt 6267476  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 22335422 - 22335382
Alignment:
Q  270 tcggggtttcaaccacataccttgcatatattatgcattgt 310  Q
    ||||||||| |||| || |||||||||||||||||||||||    
T  22335422 tcggggtttgaacctcagaccttgcatatattatgcattgt 22335382  T

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