View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_7 (Length: 337)
Name: NF3005_low_7
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 46096451 - 46096124
Alignment:
| Q |
1 |
tatacttgttcatcgcataatattgttgagactcggtgacaca--tcatacccatcaaaattttcttttatgaatagtagaaattttttcgtccaaaata |
98 |
Q |
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| T |
46096451 |
tatacttgttcatcgcataatattgttgagactcggtgacacacatcatacccatcaaatttttcttttatgaatagtagaaattttttcgtccaaaata |
46096352 |
T |
|
| Q |
99 |
aatattgaaatttattttcgtatttatttctaaagttgcatatgatttttaatatgtgccattttatccaaagtcgaatttttcttgtaagacttggtgt |
198 |
Q |
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| T |
46096351 |
aatattgaaatttattttcgtatttatttctaaagttgcatatgatttttaatatgtgcc-ttttatccaaagtcgaatttttcttgtaagacttggtgt |
46096253 |
T |
|
| Q |
199 |
aaagttactcatactagataaatgaccactcattaagtatgtgtttgcttcagcatttttcctttcctgccgcacgtttagagcactttttgttgttgtt |
298 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||||||||||||||| |
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| T |
46096252 |
aaagttaatcatactagataaatgaccactcattaagtatgtgtttgcttcagcgtttttccttttctgccgcaagtttaaagcactttttgttgttgtt |
46096153 |
T |
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| Q |
299 |
ttgagaagtttccatttgtagcttctgtg |
327 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
46096152 |
ttgagaagtttctatttgtagcttctgtg |
46096124 |
T |
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