View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3005_low_9 (Length: 326)
Name: NF3005_low_9
Description: NF3005
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3005_low_9 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 39082236 - 39082544
Alignment:
| Q |
18 |
aattcatggtatacacattcatcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgat |
117 |
Q |
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| T |
39082236 |
aattcatggtatacacattcatcattgtgtacgaggtggtagtggttatgtgagtgactctcctaaccatcgtgttaggaaagaaagatcggatggtgat |
39082335 |
T |
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| Q |
118 |
gggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctg |
217 |
Q |
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| T |
39082336 |
gggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctg |
39082435 |
T |
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| Q |
218 |
ttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagc |
317 |
Q |
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| T |
39082436 |
ttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcctatgaaggggacaaaaatatgcaagctactatagc |
39082535 |
T |
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| Q |
318 |
ttttaacca |
326 |
Q |
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| T |
39082536 |
ttttaacca |
39082544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 84 - 326
Target Start/End: Original strand, 31726939 - 31727181
Alignment:
| Q |
84 |
ccatcgtgttaggaaagaaagatcggatggtgatgggattacaatatatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgac |
183 |
Q |
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| T |
31726939 |
ccatcgtgttaggaaagaaagatcggatggtgatgggatcacaatctatggtgcggctcatatttgggtggatcattgttccttgtcaaattgttttgat |
31727038 |
T |
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| Q |
184 |
ggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgattcct |
283 |
Q |
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| T |
31727039 |
ggtttcattgatgttgttcatggatcaacggctgttactatttctaataattatatgacccgtcataacaaagttatgctctttggtcatagtgattcct |
31727138 |
T |
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| Q |
284 |
atgaaggggacaaaaatatgcaagctactatagcttttaacca |
326 |
Q |
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| T |
31727139 |
atgaagaggacaaaaatatgcaagctactatagcttttaacca |
31727181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 39075959 - 39076048
Alignment:
| Q |
190 |
attgatgttgttcatggatcaacggctgttactatttctaataattatatgacacgtcataacaaagttatgctctttggtcatagtgat |
279 |
Q |
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| T |
39075959 |
attgatgttattcatggatctacagctattactatttctaataatttcatgactcatcataataaggttatgcttttgggtcatagtgat |
39076048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 142 - 281
Target Start/End: Complemental strand, 7593472 - 7593333
Alignment:
| Q |
142 |
catatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatga |
241 |
Q |
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| T |
7593472 |
catatttggattgatcattgttctttgtctaattgtcgtgatggtcttattgatgttatacatggatctaatgctattactatttcaaataactatatga |
7593373 |
T |
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| Q |
242 |
cacgtcataacaaagttatgctctttggtcatagtgattc |
281 |
Q |
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| T |
7593372 |
ctcatcatgacaaagttatgcttttgggacatagtgattc |
7593333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 43131344 - 43131482
Alignment:
| Q |
141 |
tcatatttgggtggatcattgttccttgtcaaattgttttgacggtttgattgatgttgttcatggatcaacggctgttactatttctaataattatatg |
240 |
Q |
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|||| ||||||||||||||||||| ||||| || ||| ||| ||||||||||||| | ||||||| || || || |||| || ||||| ||||||||| |
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| T |
43131344 |
tcatgtttgggtggatcattgttctttgtctaactgtaatgatggtttgattgatgctattcatgggtccactgcaattaccatctctaacaattatatg |
43131443 |
T |
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| Q |
241 |
acacgtcataacaaagttatgctctttggtcatagtgat |
279 |
Q |
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| T |
43131444 |
actcaccatgataaagttatgcttttgggtcatagtgat |
43131482 |
T |
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