View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_high_10 (Length: 302)

Name: NF3006_high_10
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_high_10
NF3006_high_10
[»] chr5 (6 HSPs)
chr5 (10-286)||(1496721-1496998)
chr5 (82-260)||(1504348-1504526)
chr5 (77-230)||(1477578-1477731)
chr5 (82-227)||(1481694-1481839)
chr5 (82-198)||(1491584-1491700)
chr5 (118-204)||(1485466-1485552)
[»] chr2 (1 HSPs)
chr2 (97-232)||(24165475-24165610)
[»] chr1 (3 HSPs)
chr1 (97-269)||(44128177-44128349)
chr1 (97-269)||(44132382-44132554)
chr1 (97-269)||(44140804-44140976)
[»] chr7 (5 HSPs)
chr7 (97-269)||(5283872-5284044)
chr7 (97-269)||(5290083-5290255)
chr7 (97-269)||(5302060-5302232)
chr7 (97-269)||(5309697-5309869)
chr7 (97-198)||(5314514-5314615)


Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 10 - 286
Target Start/End: Original strand, 1496721 - 1496998
Alignment:
Q  10 attattctatgcatgatcttaaaaagcacattattatattacttttttgctttataattagaaa-catatattaagatggtaactgtatctgaaattcga 108  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1496721 attattctatgtatgatcttaaaaagcacattattatattacttttttgctttataattagaaaacatatattaagatggtaactgtatctgaaattcga 1496820  T
Q  109 agggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctatttca 208  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1496821 agggctcaaagggcagaaggccctacaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctatttca 1496920  T
Q  209 gagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagtaaaaaatttctctatact 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1496921 gagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagtaaaaattttctctatact 1496998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 82 - 260
Target Start/End: Original strand, 1504348 - 1504526
Alignment:
Q  82 aagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaac 181  Q
    |||||||| | ||||||||||||||| | |||||| || |||||||| |||||||| || || || |||||||||||||||||| |||||||| ||||||    
T  1504348 aagatggtgagtgtatctgaaattcgcaaggctcagagagcagaaggtcctgcaaccattttggccattggcactgcaaatccaccaaattgtgttgaac 1504447  T
Q  182 aaagcacatatcctgatctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcat 260  Q
    ||||||||||||||||| |||| || ||| ||||||||| ||| ||||| |||||| | ||| ||||||| || |||||    
T  1504448 aaagcacatatcctgatttctactttagaatcacaaacagtgaacacaaaactgaactcaaagagaaatttcaacgcat 1504526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 230
Target Start/End: Original strand, 1477578 - 1477731
Alignment:
Q  77 atattaagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtat 176  Q
    |||| |||||||| | ||||||||||||||| | |||||| ||||||||||||||||| || ||| | || |||||||||||||||||| | || ||| |    
T  1477578 atatcaagatggtgagtgtatctgaaattcgcaaggctcagagggcagaaggccctgccaccatcatggccattggcactgcaaatccagccaactgtgt 1477677  T
Q  177 tgaacaaagcacatatcctgatctctatttcagagtcacaaacaatgagcacaa 230  Q
    |||||||||||||||||||||| | || |||| | ||||||||| |||||||||    
T  1477678 tgaacaaagcacatatcctgatttttacttcaaaatcacaaacagtgagcacaa 1477731  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 1481694 - 1481839
Alignment:
Q  82 aagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaac 181  Q
    |||||||| | ||||||||||||||| | |||||||||||||||||| |||||||| || || || |||||||||||||||||| |||| ||| ||||||    
T  1481694 aagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaac 1481793  T
Q  182 aaagcacatatcctgatctctatttcagagtcacaaacaatgagca 227  Q
    ||||||||||||||||| | || || | | ||||||||| ||||||    
T  1481794 aaagcacatatcctgatttttactttaaaatcacaaacagtgagca 1481839  T

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Target: chr5; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 82 - 198
Target Start/End: Original strand, 1491584 - 1491700
Alignment:
Q  82 aagatggtaactgtatctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaac 181  Q
    |||||||| | ||||||||||||||| | |||||||||||||||||| |||||||| || || || |||||||||||||||||| |||| ||| ||||||    
T  1491584 aagatggtgagtgtatctgaaattcgcaaggctcaaagggcagaaggtcctgcaaccatattggccattggcactgcaaatccagcaaactgtgttgaac 1491683  T
Q  182 aaagcacatatcctgat 198  Q
    |||||||||||||||||    
T  1491684 aaagcacatatcctgat 1491700  T

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Target: chr5; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 204
Target Start/End: Original strand, 1485466 - 1485552
Alignment:
Q  118 agggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctgatctctat 204  Q
    |||||||||||||||||||  ||||| || || || |||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  1485466 agggcagaaggccctgcaatcatcttggccataggaactgcaaatccaccaaattgtgttgaacaaagcacatatcctgatttctat 1485552  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 232
Target Start/End: Complemental strand, 24165610 - 24165475
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| ||| |||||||||||||||||||||    
T  24165610 tctgaaattcgtaaggctcaaagggcagaaggccctgcaactatcttggccattggcactgcaaatccaccaaactgtgttgaacaaagcacatatcctg 24165511  T
Q  197 atctctatttcagagtcacaaacaatgagcacaaga 232  Q
    || |||| || |||||||||||||  ||||||||||    
T  24165510 atttctactttagagtcacaaacagcgagcacaaga 24165475  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 44128177 - 44128349
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  |||||||||||||||||||||||||| || ||||| |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  44128177 tctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctg 44128276  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || |||| |||| | ||||||| | ||| |||||||||||| | ||| |||||||||| ||||| ||| ||||    
T  44128277 atttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagta 44128349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 44132382 - 44132554
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  |||||||||||||||||||||||||| || ||||| |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  44132382 tctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctg 44132481  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || |||| |||| | ||||||| | ||| |||||||||||| | ||| |||||||||| ||||| ||| ||||    
T  44132482 atttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagta 44132554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 44140804 - 44140976
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  |||||||||||||||||||||||||| || ||||| |||||||||||||| ||| | |||||| |||||||||||||||||||||    
T  44140804 tctgaaattcgcaatgctcaaagggcagaaggccctgcaaccattttagccattggcactgcaaacccagccaattgtgttgaacaaagcacatatcctg 44140903  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || |||| |||| | ||||||| | ||| |||||||||||| | ||| |||||||||| ||||| ||| ||||    
T  44140904 atttctacttcaaaatcacaaatagtgaacacaagactgaactcaaagagaaattccaacgcatgtgtaagta 44140976  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5283872 - 5284044
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  |||||||||||||||||||||||||| ||||| || ||||| |||||||||||| |||||||| ||||||||||||| |||||||    
T  5283872 tctgaaattcgtaaagctcaaagggcagaaggccctgcaaccatcttggccattgggactgcaaatccagcaaattgtgttgaacaaagcacgtatcctg 5283971  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || | || || | | ||||||||| ||| ||||| |||||| | ||| ||||||| |||||||| ||| ||||    
T  5283972 atttttactttaaaatcacaaacagtgaacacaaaactgaacttaaagagaaatttcagcgcatgtgtaagta 5284044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 269
Target Start/End: Complemental strand, 5290255 - 5290083
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  5290255 tctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctg 5290156  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || | || || | | | ||||| | ||| ||||| |||||| | ||| ||||||| |||||||| ||| ||||    
T  5290155 atttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagta 5290083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5302060 - 5302232
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  ||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||    
T  5302060 tctgaaattcgtaaagctcaaagggcagaaggtcctgcaactatcttagccattggcactgcaaatccagcaaattgtgttgaacaaagcacttatcctg 5302159  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || | || || | | | ||||| | ||| ||||| |||||| | ||| ||||||| |||||||| ||| ||||    
T  5302160 atttttactttaaaattacaaatagtgaacacaaaactgaactcaaagagaaatttcagcgcatgtgtaagta 5302232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 97 - 269
Target Start/End: Original strand, 5309697 - 5309869
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| |  |||||||| |||||||| ||||||||||| || || ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  5309697 tctgaaattcgtaatgctcaaagagcagaaggtcctgcaactattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctg 5309796  T
Q  197 atctctatttcagagtcacaaacaatgagcacaagactgaattaaaaaagaaattccagcgcatatgttagta 269  Q
    || | || || | | ||||||| | ||| ||||| |||||| | ||  ||||||| |||||||| ||| ||||    
T  5309797 atttttactttaaaatcacaaatagtgaacacaaaactgaacttaaggagaaatttcagcgcatgtgtaagta 5309869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 5314514 - 5314615
Alignment:
Q  97 tctgaaattcgaagggctcaaagggcagaaggccctgcaactatcttagctattggcactgcaaatccaacaaattgtattgaacaaagcacatatcctg 196  Q
    ||||||||||| | ||||||||| |||||||| |||||||| || || || ||||| |||||||||||| |||||||| |||||||||||||||||||||    
T  5314514 tctgaaattcgtaaggctcaaagagcagaaggtcctgcaaccattttggccattggtactgcaaatccagcaaattgtgttgaacaaagcacatatcctg 5314613  T
Q  197 at 198  Q
    ||    
T  5314614 at 5314615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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