View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_high_13 (Length: 261)

Name: NF3006_high_13
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_high_13
NF3006_high_13
[»] chr7 (9 HSPs)
chr7 (122-261)||(34721426-34721565)
chr7 (12-261)||(34727740-34727989)
chr7 (12-261)||(18928737-18928986)
chr7 (16-257)||(34715870-34716114)
chr7 (200-261)||(34730898-34730959)
chr7 (13-173)||(34717711-34717871)
chr7 (208-261)||(18924027-18924080)
chr7 (12-261)||(34735497-34735746)
chr7 (16-71)||(18923835-18923890)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 34721565 - 34721426
Alignment:
Q  122 tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  34721565 tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa 34721466  T
Q  222 gtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34721465 gtttgggaacaagacaatggccaagtttctttacaacaac 34721426  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    |||||||||||||||||||||||||| || |||||||| |||||||  |||||||||||| | ||| || |||   || | |||  ||  ||| ||||||    
T  34727989 acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc 34727890  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    |||| ||||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |      || ||||||||||||    
T  34727889 ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa 34727790  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| ||||||||||||||||||| |||||   ||||||| |||||||||    
T  34727789 tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac 34727740  T

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Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    ||||| |||||||||||||||||||| || |||||||| |||||||  ||||||||| || | |||||| || |  |  | |||  ||  ||| ||||||    
T  18928737 acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc 18928836  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    |||| ||||| ||   |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |   |  || ||||||||||||    
T  18928837 ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa 18928936  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| |||||| ||||||||| || ||||| || |||||| |||||||||    
T  18928937 tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac 18928986  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 34716114 - 34715870
Alignment:
Q  16 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg 115  Q
    ||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| |  |   |  ||| |||| || |||| ||||||||||    
T  34716114 acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg 34716015  T
Q  116 gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat 212  Q
    |||||| ||||  |||||||||||||||||||| ||||| ||| |   ||||||| || ||| ||   ||  |||| |   | |||  |||||| |||||    
T  34716014 gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat 34715915  T
Q  213 gtcggggaagtttgggaacaagacaatggccaagtttctttacaa 257  Q
    ||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  34715914 gtcggtgaagtttggaaacaagataatggcgaagtttctttacaa 34715870  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
Q  200 tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||||||||||||||| ||||||||||||||||||| ||||||  ||||||| |||||||||    
T  34730959 tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac 34730898  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
Q  13 cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct 112  Q
    |||||||||| ||||  |||||||| || | ||| |||||| ||| ||||||||||||| | ||  || ||||| |||| |||  ||   |||||||| |    
T  34717871 cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat 34717772  T
Q  113 tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa 173  Q
    ||||||||| |||  ||||||||| |  |||||||||||||||||||||  ||||||||||    
T  34717771 tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa 34717711  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 18924027 - 18924080
Alignment:
Q  208 taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||||||| || |||||||||||||||| |||||| ||||||||||||||||||    
T  18924027 taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaac 18924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34735746 - 34735497
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    ||||||||||| ||||| ||||||||||| |||||| | |||||||  |||||| | ||| | |||||| ||||  || | |||  |   ||| ||||||    
T  34735746 acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc 34735647  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    | ||  |||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | | ||||  |||| |      || |||||||| |||    
T  34735646 tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa 34735547  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| ||||||| ||||||||||| ||||||  ||||||| |||||||||    
T  34735546 tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaac 34735497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
Q  16 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt 71  Q
    ||||||||||||| |||||||| || ||||| |||||||||| |||||| ||||||    
T  18923835 acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt 18923890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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