View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_high_14 (Length: 252)
Name: NF3006_high_14
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 34721175 - 34721394
Alignment:
| Q |
18 |
cattgtatacacatgatccacctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatg |
117 |
Q |
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| T |
34721175 |
cattgtatacacatgatccacctgaagcctgcgaagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaa----tctacgacttatg |
34721270 |
T |
|
| Q |
118 |
cacaaagcatccaactggttcagtttattcacatcgtccaacacaagaaacattttcctccggggaagcatcccttgcaacatcctttttcccaattcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721271 |
cacaaagcatccaactggttcagtttattcacatcgtccaacacaagaaacattttcctccggggaagcatcccttgcaacatcctttttcccaattcaa |
34721370 |
T |
|
| Q |
218 |
ctgaatttatcattactcttctgt |
241 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
34721371 |
ctgaatttatcattactcttctgt |
34721394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 240
Target Start/End: Original strand, 34715618 - 34715837
Alignment:
| Q |
21 |
tgtatacacatgatccacctgaagcctgtgaagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcac |
120 |
Q |
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| T |
34715618 |
tgtatatacatggtccacctgaagccaccgaagtaaatcatgatctctcgttgtgatgattattatacttccttgaccaaaccatttgcgtcttatgcac |
34715717 |
T |
|
| Q |
121 |
aaagcatccaactggttcagtttattcacatcgtccaacacaagaaacattttcctccggggaagcatcccttgcaacatcctttttcccaattcaactg |
220 |
Q |
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| T |
34715718 |
aaagcacccaattggtcttttttattcacatcgtcaaccacaagtaatatcttccaacggggaagcctctcctgcaatatcctttttccggattcaactg |
34715817 |
T |
|
| Q |
221 |
aatttatcattactcttctg |
240 |
Q |
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||||||| ||| ||||||| |
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| T |
34715818 |
tatttatcgttattcttctg |
34715837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 66 - 220
Target Start/End: Complemental strand, 18924283 - 18924129
Alignment:
| Q |
66 |
tcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcacaaagcatccaactggttcagtttattcacatcgtccaacacaaga |
165 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||| || | | ||| |||||||| ||||| |||||| |
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| T |
18924283 |
tcttgttgtgatgattattatacttccttgaccaaaccatttgcaacttatgcacaaagcatccaattgatgctgttcattcacattgtccaccacaagt |
18924184 |
T |
|
| Q |
166 |
aacattttcctccggggaagcatcccttgcaacatcctttttcccaattcaactg |
220 |
Q |
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| T |
18924183 |
aacatcctcttctgtggaagcatttcctgcaatatcatttttcctgattcaactg |
18924129 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 34730683 - 34730799
Alignment:
| Q |
51 |
aagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcacaaagcatccaactggttcagtttattcaca |
150 |
Q |
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|
|||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||| ||||||||||| ||| |||| ||||||||||||| |
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| T |
34730683 |
aagtaaatcatcatctcttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcaca |
34730782 |
T |
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| Q |
151 |
tcgtccaacacaagaaa |
167 |
Q |
| |
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||||||| ||||||||| |
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| T |
34730783 |
tcgtccagcacaagaaa |
34730799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 167
Target Start/End: Original strand, 34735282 - 34735398
Alignment:
| Q |
51 |
aagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcacaaagcatccaactggttcagtttattcaca |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || |||||||| |||| ||||||||||| ||| |||| ||||||||||||| |
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| T |
34735282 |
aagtaaatcatcatctcttgttgtgatgattattctacttccttcaccaaaccatccgtgacttccgcacaaagcattcaattggtccagtttattcaca |
34735381 |
T |
|
| Q |
151 |
tcgtccaacacaagaaa |
167 |
Q |
| |
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||||||| ||||||||| |
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| T |
34735382 |
tcgtccagcacaagaaa |
34735398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 18929201 - 18929085
Alignment:
| Q |
51 |
aagtaaatcaacatctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcacaaagcatccaactggttcagtttattcaca |
150 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||| || ||||||| |||| ||||||||||| ||| |||| | |||||||||| |
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|
| T |
18929201 |
aagtaaatcatcatctcttgttgtgatgattattctacttccttcaccaaaccattcgtgacttccgcacaaagcattcaattggtcctctttattcaca |
18929102 |
T |
|
| Q |
151 |
tcgtccaacacaagaaa |
167 |
Q |
| |
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||||||||||||||||| |
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| T |
18929101 |
tcgtccaacacaagaaa |
18929085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 155
Target Start/End: Original strand, 4322902 - 4322994
Alignment:
| Q |
63 |
atctcttgttgtgatgattattacacttccttgacaaaaccatctacaacttatgcacaaagcatccaactggttcagtttattcacatcgtc |
155 |
Q |
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|||||| ||||||||||||||| ||| ||| || ||||||| |||||||| |||||||||| | ||||| |||||||||||||||||| |
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| T |
4322902 |
atctctagttgtgatgattattctactacctggagcaaaccatttacaacttccacacaaagcatttagctggtccagtttattcacatcgtc |
4322994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 3313237 - 3313205
Alignment:
| Q |
61 |
acatctcttgttgtgatgattattacacttcct |
93 |
Q |
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||||||||||||||||||||||||| ||||||| |
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| T |
3313237 |
acatctcttgttgtgatgattattatacttcct |
3313205 |
T |
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