View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_high_19 (Length: 241)

Name: NF3006_high_19
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_high_19
NF3006_high_19
[»] chr3 (38 HSPs)
chr3 (22-241)||(10769189-10769409)
chr3 (22-241)||(10760870-10761090)
chr3 (22-241)||(38449283-38449503)
chr3 (22-241)||(38455770-38455990)
chr3 (22-241)||(30051322-30051540)
chr3 (22-235)||(11839945-11840161)
chr3 (22-241)||(49151332-49151551)
chr3 (22-241)||(49157399-49157618)
chr3 (22-235)||(10238432-10238648)
chr3 (22-235)||(10244554-10244770)
chr3 (22-235)||(42191440-42191656)
chr3 (22-235)||(42197382-42197598)
chr3 (22-241)||(8331507-8331726)
chr3 (24-235)||(26429639-26429853)
chr3 (22-235)||(17056013-17056227)
chr3 (22-241)||(28964600-28964811)
chr3 (22-235)||(55003632-55003837)
chr3 (22-213)||(48128260-48128451)
chr3 (21-178)||(13444840-13444998)
chr3 (25-241)||(46656400-46656610)
chr3 (22-101)||(13837534-13837613)
chr3 (21-194)||(53069278-53069443)
chr3 (35-238)||(2982458-2982662)
chr3 (164-241)||(23138779-23138856)
chr3 (165-241)||(11846340-11846416)
chr3 (78-198)||(13367114-13367233)
chr3 (21-241)||(12108890-12109107)
chr3 (109-198)||(9760481-9760570)
chr3 (148-235)||(17601879-17601969)
chr3 (14-64)||(24643765-24643815)
chr3 (190-241)||(53071640-53071691)
chr3 (22-78)||(11846283-11846340)
chr3 (21-101)||(34300350-34300430)
chr3 (196-241)||(24643885-24643930)
chr3 (86-151)||(24643817-24643878)
chr3 (107-151)||(17593493-17593537)
chr3 (202-241)||(34300158-34300197)
chr3 (209-241)||(27103272-27103304)
[»] chr1 (18 HSPs)
chr1 (22-241)||(31051264-31051484)
chr1 (13-241)||(44409720-44409949)
chr1 (22-241)||(31057764-31057984)
chr1 (22-241)||(34739706-34739925)
chr1 (22-235)||(25387724-25387938)
chr1 (22-235)||(25381755-25381971)
chr1 (22-235)||(1077968-1078184)
chr1 (21-241)||(8093065-8093285)
chr1 (22-235)||(50305921-50306129)
chr1 (22-241)||(38152184-38152397)
chr1 (19-239)||(24926978-24927197)
chr1 (33-241)||(27954881-27955088)
chr1 (33-233)||(24963940-24964139)
chr1 (152-241)||(12183961-12184053)
chr1 (176-235)||(25275421-25275482)
chr1 (41-241)||(33458149-33458349)
chr1 (33-80)||(12183820-12183867)
chr1 (47-114)||(23253997-23254063)
[»] chr4 (28 HSPs)
chr4 (13-241)||(26957014-26957243)
chr4 (22-241)||(6257425-6257644)
chr4 (22-241)||(48166898-48167118)
chr4 (22-241)||(48160679-48160899)
chr4 (22-232)||(24287714-24287926)
chr4 (22-241)||(10733572-10733789)
chr4 (22-241)||(10947341-10947558)
chr4 (22-241)||(10739559-10739776)
chr4 (22-241)||(10953328-10953545)
chr4 (71-241)||(26971824-26971994)
chr4 (21-241)||(44831838-44832054)
chr4 (23-241)||(50168315-50168532)
chr4 (22-197)||(33458487-33458662)
chr4 (22-197)||(33461612-33461787)
chr4 (23-241)||(50155681-50155897)
chr4 (22-151)||(4632192-4632321)
chr4 (22-241)||(35177514-35177736)
chr4 (24-241)||(17627002-17627214)
chr4 (21-171)||(49976382-49976525)
chr4 (32-240)||(19686551-19686756)
chr4 (22-99)||(32284542-32284619)
chr4 (21-97)||(3769434-3769510)
chr4 (103-235)||(9237107-9237239)
chr4 (22-99)||(33045107-33045184)
chr4 (22-63)||(10733466-10733507)
chr4 (22-63)||(10947235-10947276)
chr4 (37-80)||(50427238-50427281)
chr4 (21-85)||(45236479-45236543)
[»] chr6 (19 HSPs)
chr6 (22-241)||(8651023-8651243)
chr6 (13-241)||(21197241-21197480)
chr6 (22-235)||(4580541-4580757)
chr6 (22-241)||(21191086-21191309)
chr6 (22-235)||(25353935-25354151)
chr6 (13-240)||(21770778-21771003)
chr6 (22-235)||(25343349-25343564)
chr6 (21-241)||(31756439-31756658)
chr6 (13-241)||(21783529-21783765)
chr6 (13-241)||(21789752-21789988)
chr6 (14-213)||(17581384-17581580)
chr6 (41-241)||(30905821-30906020)
chr6 (25-198)||(28728047-28728218)
chr6 (68-240)||(1106034-1106206)
chr6 (205-241)||(6097031-6097067)
chr6 (22-87)||(20745431-20745496)
chr6 (209-241)||(17581324-17581356)
chr6 (152-202)||(12801889-12801940)
chr6 (35-131)||(17900378-17900472)
[»] chr8 (20 HSPs)
chr8 (22-241)||(5542380-5542600)
chr8 (22-241)||(22219947-22220167)
chr8 (22-240)||(10705559-10705777)
chr8 (22-235)||(32890612-32890828)
chr8 (22-235)||(32896736-32896952)
chr8 (22-241)||(10699749-10699969)
chr8 (22-235)||(36818696-36818911)
chr8 (19-241)||(42033517-42033743)
chr8 (22-235)||(42993223-42993435)
chr8 (21-241)||(39735767-39735978)
chr8 (23-235)||(9935007-9935217)
chr8 (23-241)||(14417681-14417879)
chr8 (21-139)||(39727527-39727645)
chr8 (19-135)||(1883036-1883151)
chr8 (164-241)||(39727647-39727724)
chr8 (161-239)||(17954228-17954308)
chr8 (145-224)||(1883185-1883267)
chr8 (17-58)||(1171249-1171290)
chr8 (72-101)||(1171220-1171249)
chr8 (209-241)||(11641424-11641456)
[»] chr7 (28 HSPs)
chr7 (22-241)||(3811389-3811608)
chr7 (22-241)||(3817531-3817750)
chr7 (22-241)||(351507-351726)
chr7 (22-241)||(339101-339319)
chr7 (22-235)||(28421179-28421394)
chr7 (19-241)||(22742146-22742369)
chr7 (22-241)||(5849250-5849469)
chr7 (29-241)||(35148236-35148448)
chr7 (22-235)||(5979394-5979611)
chr7 (21-229)||(43539709-43539920)
chr7 (22-150)||(20238762-20238890)
chr7 (61-241)||(26383389-26383569)
chr7 (123-241)||(35152849-35152968)
chr7 (22-177)||(15843730-15843886)
chr7 (22-177)||(15860839-15860995)
chr7 (98-241)||(42767500-42767642)
chr7 (22-223)||(26380830-26381023)
chr7 (21-127)||(35150760-35150865)
chr7 (23-241)||(7608146-7608381)
chr7 (18-235)||(18656869-18657085)
chr7 (34-97)||(3677889-3677952)
chr7 (21-67)||(12803893-12803939)
chr7 (21-55)||(24690848-24690882)
chr7 (56-224)||(8824535-8824701)
chr7 (200-237)||(18666881-18666918)
chr7 (118-155)||(15843687-15843724)
chr7 (118-155)||(15860796-15860833)
chr7 (134-229)||(24690650-24690743)
[»] chr2 (23 HSPs)
chr2 (22-241)||(30965047-30965267)
chr2 (22-241)||(31002096-31002316)
chr2 (22-241)||(44717025-44717245)
chr2 (21-235)||(35084898-35085115)
chr2 (29-241)||(28683172-28683384)
chr2 (22-241)||(31008074-31008294)
chr2 (21-235)||(35090871-35091088)
chr2 (22-235)||(13455823-13456039)
chr2 (22-235)||(13461764-13461980)
chr2 (22-232)||(36750141-36750354)
chr2 (22-241)||(13149904-13150129)
chr2 (27-241)||(11048776-11048994)
chr2 (19-224)||(23343290-23343496)
chr2 (24-241)||(19879314-19879536)
chr2 (101-241)||(35439669-35439810)
chr2 (14-101)||(35438917-35439004)
chr2 (161-241)||(35442192-35442272)
chr2 (123-241)||(7771508-7771626)
chr2 (21-241)||(29832925-29833143)
chr2 (21-241)||(31651351-31651565)
chr2 (23-85)||(29034697-29034759)
chr2 (34-202)||(28765341-28765508)
chr2 (123-224)||(23284680-23284784)
[»] scaffold0208 (2 HSPs)
scaffold0208 (22-235)||(6246-6462)
scaffold0208 (22-235)||(12119-12335)
[»] chr5 (21 HSPs)
chr5 (25-241)||(28525609-28525825)
chr5 (22-241)||(41296999-41297222)
chr5 (22-241)||(7389767-7389987)
chr5 (22-235)||(12686399-12686614)
chr5 (22-235)||(12692501-12692716)
chr5 (25-241)||(28531705-28531921)
chr5 (22-235)||(32094441-32094657)
chr5 (22-235)||(32097242-32097458)
chr5 (21-241)||(20499858-20500079)
chr5 (21-222)||(14609909-14610109)
chr5 (19-237)||(19059988-19060208)
chr5 (21-241)||(30772000-30772222)
chr5 (23-241)||(30384607-30384823)
chr5 (19-202)||(19066329-19066512)
chr5 (21-216)||(26318479-26318677)
chr5 (28-216)||(26509595-26509781)
chr5 (43-180)||(33753476-33753612)
chr5 (161-241)||(8706746-8706826)
chr5 (43-176)||(33849110-33849242)
chr5 (21-55)||(8706638-8706672)
chr5 (204-241)||(14609851-14609888)
[»] scaffold0012 (1 HSPs)
scaffold0012 (22-241)||(173110-173329)
[»] scaffold0440 (1 HSPs)
scaffold0440 (22-241)||(1414-1627)
[»] scaffold0363 (1 HSPs)
scaffold0363 (23-241)||(840-1038)
[»] scaffold1114 (2 HSPs)
scaffold1114 (75-241)||(783-949)
scaffold1114 (21-95)||(950-1024)
[»] scaffold0064 (1 HSPs)
scaffold0064 (118-241)||(13993-14117)
[»] scaffold0185 (2 HSPs)
scaffold0185 (109-241)||(5687-5821)
scaffold0185 (21-80)||(5826-5885)
[»] scaffold0085 (1 HSPs)
scaffold0085 (41-235)||(38152-38347)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10769189 - 10769409
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10769189 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 10769288  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10769289 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 10769388  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  10769389 ttaaatatttaattaattatc 10769409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10760870 - 10761090
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760870 gttagcggcgactgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 10760969  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10760970 ggggaccatagcctcttttatattggatggtcattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 10761069  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  10761070 ttaaatatttaattaattatc 10761090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 38449283 - 38449503
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38449283 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 38449382  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  38449383 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaa 38449482  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  38449483 ttaaatatttaattaattatc 38449503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 38455770 - 38455990
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38455770 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 38455869  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  38455870 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaa 38455969  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  38455970 ttaaatatttaattaattatc 38455990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 30051322 - 30051540
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||    
T  30051322 gttagcgacggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatgggcagaagagagagt-ttgccgtgtacggtatatt 30051420  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  30051421 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcgttaagtccatatcaactaat 30051520  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  30051521 taaatatttaattaattatc 30051540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 11839945 - 11840161
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  11839945 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 11840044  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  11840045 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 11840144  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  11840145 aattaaataattaatta 11840161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 49151551 - 49151332
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  49151551 gttagcggtggctgatttgattcttcctcaaccggtacctttatgcctcacgttctcttcagatggggagaagagagagt-ttgccatgtacggtatatt 49151453  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49151452 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 49151353  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  49151352 ttaaatatttaattaattatc 49151332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 49157618 - 49157399
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||    
T  49157618 gttagcggtggctgatttgattcttcctcaaccggtacctttatgcctcacgttctcttcagatggggagaagagagagt-ttgccatgtacggtatatt 49157520  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49157519 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 49157420  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  49157419 ttaaatatttaattaattatc 49157399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 10238432 - 10238648
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10238432 gttagcggcggctgatttggttcttcctcaaccggtacatttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 10238531  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  10238532 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 10238631  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  10238632 aattaaataattaatta 10238648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 10244554 - 10244770
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  10244554 gttagcggcggctgatttggttcttcctcaaccggtacatttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 10244653  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  10244654 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 10244753  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  10244754 aattaaataattaatta 10244770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 42191440 - 42191656
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  42191440 gttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 42191539  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  42191540 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 42191639  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  42191640 aattaaataattaatta 42191656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 42197382 - 42197598
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  42197382 gttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 42197481  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  42197482 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 42197581  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  42197582 aattaaataattaatta 42197598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 8331726 - 8331507
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || ||||    
T  8331726 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacagtgtatt 8331628  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |    
T  8331627 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactga 8331528  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  8331527 ttaaatatttaattaattatc 8331507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 26429639 - 26429853
Alignment:
Q  24 tagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattgg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  26429639 tagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatattgg 26429738  T
Q  124 ggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaactaa 220  Q
    |||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||| |||||||||||||    
T  26429739 ggaccatagcctcttttatactggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagcccatatcaactaa 26429838  T
Q  221 ttaaatatttaatta 235  Q
    ||||||| |||||||    
T  26429839 ttaaataattaatta 26429853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 17056013 - 17056227
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||    
T  17056013 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacgatgtatt 17056111  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||  |||||||||||||||||    
T  17056112 ggggaccatagcctcttttatattggatgtccattagggtttcccattattccgttaatagg-catccggacatccactcatgttgagtccatatcaact 17056210  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  17056211 aattaaataattaatta 17056227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 28964811 - 28964600
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||| ||||||||||||||||||||        ||||||| |||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  28964811 gttagcggcggctaatttggttcttcctcaaccg--------atgcctcgagttctcttcagatggggagaagagagagttttc-cgtgtacggtatatt 28964721  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28964720 ggggaccatagcctcttttatattggatgaccattagggtttctcattattccgttaatggaccatccggacatccactcattgagtccatatcaactaa 28964621  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  28964620 ttaaatatttaattaattatc 28964600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 55003632 - 55003837
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||   ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55003632 gttagcggcggctgatttggttc---ctcaatcggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtacggtatatt 55003727  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaacta 219  Q
    |||||||||| ||||||||||||||||||      | | || ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  55003728 ggggaccataacctcttttatattggatg------acgtttcccattattccgttaatgggtcatccggacatccactcatgttgagtccatatcaacta 55003821  T
Q  220 attaaatatttaatta 235  Q
    |||||||| |||||||    
T  55003822 attaaataattaatta 55003837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 22 - 213
Target Start/End: Original strand, 48128260 - 48128451
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||  |||||||||||||  |||||||||||  || ||| |||||||||||||||    
T  48128260 gttagcagcggctgatttggttcttcctcaactggtacctttatgcctttagttctcttcagacagggagaagagaatgt-ttgccgtgtacggtatatt 48128358  T
Q  122 ggggaccatagcctcttttatattggatggccatt-agggtttccattattccgttaatgggccatccggacatccactcattgagtccatat 213  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48128359 ggggaccatagcctcttttatattggatgaccattaaggttttccattattccgttaatgggtcatccggacatccactcattgagtccatat 48128451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 21 - 178
Target Start/End: Complemental strand, 13444998 - 13444840
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| |||    
T  13444998 ggttagtggcggctgatttggttcttcctcaaccgatacttttatgcctcaagttctcttcagatggggagaagagagaatatcgttgtgtacggtgtat 13444899  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaa 178  Q
    ||||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  13444898 tggggaccataacctattttatattggatggccattagggtttcccattatttcgttaa 13444840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 46656610 - 46656400
Alignment:
Q  25 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggg 124  Q
    |||||||  |||||||| ||||||| |||||| ||||||||| ||| | |||| |||||||||||||||||||  || ||       ||||| |||||||    
T  46656610 agcggcgattgatttggctcttccttaaccggcacctttatgtctctaattctattcagatggggagaagagaatgtttt-------acggtgtattggg 46656518  T
Q  125 gaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaatta 223  Q
     |||||| |||||||||||||||||  ||| |||||||||| |||||||||||||| || ||||||||||||||||||| |||| |||||||||||||||    
T  46656517 aaccataacctcttttatattggataaccaatagggtttcccattattccgttaataggtcatccggacatccactcatcgagtacatatcaactaatta 46656418  T
Q  224 aatatttaattaattatc 241  Q
    ||||||||||||||||||    
T  46656417 aatatttaattaattatc 46656400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 101
Target Start/End: Complemental strand, 13837613 - 13837534
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13837613 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt 13837534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 194
Target Start/End: Original strand, 53069278 - 53069443
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||| ||| | |||||||| |||    
T  53069278 ggttagcggcggctgatttggttcttcctcaaccggtacct----------agttctcttcagatggggagaagagagagt-ttgccatgtacggtgtat 53069366  T
Q  121 tggggaccatagcctc--ttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacat 194  Q
    || |||||||||||||  |||||||||||| |  ||||||||||| ||||||||| ||||||||| |||||||||||    
T  53069367 tgaggaccatagcctcttttttatattggacgatcattagggtttcccattattctgttaatgggtcatccggacat 53069443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 238
Target Start/End: Original strand, 2982458 - 2982662
Alignment:
Q  35 gatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcc 134  Q
    ||||||||||||| ||||   ||| ||||||| || ||||||||||||||| ||||||| ||||||| | | ||| || |||||||| ||||||||  ||    
T  2982458 gatttggttcttcttcaataagtatctttatgtcttaagttctcttcagatagggagaaaagagagt-tcgccgtatatggtatatttgggaccatgacc 2982556  T
Q  135 tcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactc--attgagtccatatcaactaattaaatatttaa 232  Q
    ||||||||||| | ||| ||||||| ||| ||||||||  |||||||| ||||| |||||  ||||  |||||||  |||||||||||||||||||||||    
T  2982557 tcttttatatttgttggtcattaggattttcattattcttttaatgggtcatcctgacatatactcgtattgagtttatatcaactaattaaatatttaa 2982656  T
Q  233 ttaatt 238  Q
    ||||||    
T  2982657 ttaatt 2982662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 23138779 - 23138856
Alignment:
Q  164 ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23138779 ccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaattaaatatttaattaattatc 23138856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 165 - 241
Target Start/End: Original strand, 11846340 - 11846416
Alignment:
Q  165 cattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  11846340 cattattccgttaatgggccatccggacatccactcattgactcaatatcaactaattaaatatttaattaattatc 11846416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 78 - 198
Target Start/End: Original strand, 13367114 - 13367233
Alignment:
Q  78 cttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggttt-ccattattccgtt 176  Q
    ||||||||||||||||||| | || |||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||    
T  13367114 cttcagatggggagaagagcg-gttttgctatgtacggtatattggggaccatagcctc-tttatattggatggtcattagggtttcccattattccgtt 13367211  T
Q  177 aatgggccatccggacatccac 198  Q
    ||||| |||||| |||||||||    
T  13367212 aatggaccatccagacatccac 13367233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 12108890 - 12109107
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||     |||| || |||| ||| ||| ||| |||||||| | |||    
T  12108890 ggttagcggcgactgatttggttcttctttaaccggtacctttatgcctcaagttc-----agatcggaagaaaagatagt-ttgccgtgtacgatgtat 12108983  T
Q  121 tggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcat--tgagtccatatcaac 217  Q
    || ||||| ||  ||||||||||||| ||| |||||    |||| |||||||||||||| | | ||||  |||||| ||||||  ||||||||||||||     
T  12108984 tgaggaccgtactctcttttatattgaatgaccattgttatttctcattattccgttaacgagtcatctagacatcaactcatattgagtccatatcaat 12109083  T
Q  218 taattaaatatttaattaattatc 241  Q
    |||| |||| |||||| |||||||    
T  12109084 taatcaaatgtttaatcaattatc 12109107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 9760570 - 9760481
Alignment:
Q  109 tgtacggtatattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccac 198  Q
    ||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||||| |||||| |||||||||    
T  9760570 tgtacggtatattggggaccatatcctc-tttatattggatgaccattagggtttcctattattcctttaatggaccatccagacatccac 9760481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 17601879 - 17601969
Alignment:
Q  148 atggccattagggtttc-cattattccgttaatgggccatccggacatccactcat--tgagtccatatcaactaattaaatatttaatta 235  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||||| ||||  ||||||||||||||||||||||||| |||||||    
T  17601879 atggccattagggtttgtcattattccgttaatgggtcattcggacatccaatcatgttgagtccatatcaactaattaaataattaatta 17601969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 14 - 64
Target Start/End: Original strand, 24643765 - 24643815
Alignment:
Q  14 catcaacggttagcggcggctgatttggttcttcctcaaccggtaccttta 64  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24643765 catcaacggttagcggcggctgatttggttctttctcaaccggtaccttta 24643815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 53071640 - 53071691
Alignment:
Q  190 gacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||    
T  53071640 gacatccactcattgagttcatatcaactaattaaatattcaattaattatc 53071691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 11846283 - 11846340
Alignment:
Q  22 gttagcggcggctgattt-ggttcttcctcaaccggtacctttatgcctcaagttctc 78  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||    
T  11846283 gttagcggcggctgattttggttcttcctcaaccggaacctttatgccgcaagttctc 11846340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 101
Target Start/End: Complemental strand, 34300430 - 34300350
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt 101  Q
    ||||||||||| || |||||||| ||| ||||||||||| || ||||||||||||||||||| | | ||||| ||||||||    
T  34300430 ggttagcggcgacttatttggttattcttcaaccggtactttcatgcctcaagttctcttcatacgaggagatgagagagt 34300350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 24643885 - 24643930
Alignment:
Q  196 cactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||    
T  24643885 cactcgttgagtccatatcaattaattaaatatttaattaattatc 24643930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 24643817 - 24643878
Alignment:
Q  86 ggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatgg 151  Q
    |||||||||||||||| |||||||  ||||| |||||||| |||||||||||||||||||||||||    
T  24643817 ggggagaagagagagt-ttgtcgt--acggtgtattgggg-ccatagcctcttttatattggatgg 24643878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 151
Target Start/End: Original strand, 17593493 - 17593537
Alignment:
Q  107 cgtgtacggtatattggggaccatagcctcttttatattggatgg 151  Q
    ||||||||||||||| ||||||| |||||||||||||||| ||||    
T  17593493 cgtgtacggtatatttgggaccagagcctcttttatattgtatgg 17593537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 34300197 - 34300158
Alignment:
Q  202 ttgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||| |||||||| ||||||||||||||||||||||||    
T  34300197 ttgagttcatatcaattaattaaatatttaattaattatc 34300158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Original strand, 27103272 - 27103304
Alignment:
Q  209 catatcaactaattaaatatttaattaattatc 241  Q
    |||||||| ||||||||||||||||||||||||    
T  27103272 catatcaattaattaaatatttaattaattatc 27103304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 31051484 - 31051264
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31051484 gttagcggcggctgatttggttcttccttaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 31051385  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31051384 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 31051285  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  31051284 ttaaatatttaattaattatc 31051264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 44409949 - 44409720
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgta 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  44409949 tcatcaacggttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagttttgtcgtgta 44409850  T
Q  113 cggtatattggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccat 211  Q
      || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44409849 tagtgtattggggaccataacctcttttatattggatggccattagggtttctcattattccgttaatgggccatccggacatccactcattgagtccat 44409750  T
Q  212 atcaactaattaaatatttaattaattatc 241  Q
    || |||||||||||||||||||||||||||    
T  44409749 attaactaattaaatatttaattaattatc 44409720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 31057984 - 31057764
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31057984 gttagcggcgactgatttggttcttccttaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 31057885  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31057884 ggggatcatagcctcttttatattgtatggccattagggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatatcaactaa 31057785  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  31057784 ttaaatatttaattaattatc 31057764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 34739925 - 34739706
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  34739925 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagattgggagaagagagagt-ttgtcgtgtacggtatatt 34739827  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34739826 ggggaccacagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 34739727  T
Q  221 ttaaatatttaattaattatc 241  Q
    ||||||||||||||| |||||    
T  34739726 ttaaatatttaattatttatc 34739706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 25387724 - 25387938
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25387724 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 25387823  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  25387824 ggggaccatagcctcttttatattggatggccattagggtttcccattattccattaatgggccatccggacatccactcattaagtccatatcaactaa 25387923  T
Q  221 ttaaatatttaatta 235  Q
    ||||||| |||||||    
T  25387924 ttaaataattaatta 25387938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 25381755 - 25381971
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  25381755 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 25381854  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  |||||||||||||||||    
T  25381855 ggggaccatagcctcttttatattggatggccattagggtttcccattattccattaatgggccatccggacatccactcatgttgagtccatatcaact 25381954  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  25381955 aattaaataattaatta 25381971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 1078184 - 1077968
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||    
T  1078184 gttagcggccgctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggtgagaagagagagtattgccgtgtacggtgtatt 1078085  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||||||||    
T  1078084 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggtcatccggacatccactcatgttgagtccatatcaact 1077985  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  1077984 aattaaataattaatta 1077968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 8093065 - 8093285
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||    
T  8093065 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaaaagagagt-ttgccgtgttcggtatat 8093163  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaacta 219  Q
    ||||||||||||||||||||||||| ||||  | ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8093164 tggggaccatagcctcttttatatttgatgatcgttagggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatatcaacta 8093263  T
Q  220 attaaatatttaattaattatc 241  Q
    |||||| |||||||||||||||    
T  8093264 attaaacatttaattaattatc 8093285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 50306129 - 50305921
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| | ||| |||||||||| ||||    
T  50306129 gttagcggcggctgatttggttcttcctcaaccggta-------gcctcaagttctcttcagatggggagaagagagaat-ttgccgtgtacggtgtatt 50306038  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  50306037 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 50305938  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  50305937 aattaaataattaatta 50305921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 38152184 - 38152397
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||| |||| ||||||||||||||  |||| |||||||||||||| ||||    
T  38152184 gttagcggcagctaatttggttcttcttcaaccggtacctttatgcttcaagttttctttagatggggagaagaacgagt-ttgtcgtgtacggtgtatt 38152282  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    ||| |||||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||     ||||||||| |||||||||||||    
T  38152283 gggaaccatagcctcttttatattggatggtcattaggtttcccattattccgttaatgggtcatccggaca-----tcattgagttcatatcaactaat 38152377  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  38152378 taaatatttaattaattatc 38152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 24926978 - 24927197
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    |||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||  |  ||| ||  |    
T  24926978 acggttagtggcagctgatttggttcttcctcaaccggtacctatatgcctcaagttctcttcagatggggagaagagagagttttc-cacgtatggagt 24927076  T
Q  119 attggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaac 217  Q
    |||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||| |     
T  24927077 attgggaaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccagacatccac-cattgagtccatatccat 24927175  T
Q  218 taattaaatatttaattaatta 239  Q
    ||||||| || |||||||||||    
T  24927176 taattaattaattaattaatta 24927197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 27955088 - 27954881
Alignment:
Q  33 ctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatag 132  Q
    ||||||| ||| |||||||||||||||||||||| || ||||||||| |||||||||||||||||  ||||||||||||   || ||||||||| ||||     
T  27955088 ctgatttagttattcctcaaccggtacctttatgtcttaagttctct-cagatggggagaagagaatgtattgtcgtgt---gtgtattggggatcataa 27954993  T
Q  133 cctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcat--tgagtccatatcaactaattaaatatt 229  Q
    | |||||||||||||||| |||||| | ||||| ||||||||  ||||| |||||||  ||||||||||||  |||||||||||||||||||||||||||    
T  27954992 catcttttatattggatgaccattatgatttcccattattccactaatgagccatccatacatccactcatattgagtccatatcaactaattaaatatt 27954893  T
Q  230 taattaattatc 241  Q
    ||||||||||||    
T  27954892 taattaattatc 27954881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 24963940 - 24964139
Alignment:
Q  33 ctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatag 132  Q
    |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||| ||| |   |||||| | |||| || |||||    
T  24963940 ctgatttggttcttcctcaaccagtacatttatgcctcaagtcctcttcagatggggagaagagagagt-ttgccacatacggtgtcttggtgatcatag 24964038  T
Q  133 cctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaa 232  Q
    | ||||||||||| |||| | ||||||||||||||| ||||||||||||| ||| | ||||||||| |||||||| |||||| | ||||||| || ||||    
T  24964039 catcttttatattagatgacaattagggtttccatttttccgttaatgggtcattcagacatccacccattgagttcatatccattaattaattaattaa 24964138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 12183961 - 12184053
Alignment:
Q  152 ccattagggtttc-cattattccgttaatgggccatccggacatccactcat--tgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||    
T  12183961 ccattagggtttctcattattccgttaattggccatccggacatctactcatattgagtccatatcaactaattaaatatttaattaattatc 12184053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 235
Target Start/End: Original strand, 25275421 - 25275482
Alignment:
Q  176 taatgggccatccggacatccactcat--tgagtccatatcaactaattaaatatttaatta 235  Q
    ||||||| |||||||||||||||||||  ||||||||||||||||||||||||| |||||||    
T  25275421 taatgggtcatccggacatccactcatgttgagtccatatcaactaattaaataattaatta 25275482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 33458149 - 33458349
Alignment:
Q  41 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctctttt 140  Q
    |||||| |||||| |||| ||||||| ||  |||||| |||  ||||| |||||||||||| ||| |||||   || |||||   | ||||||||||| |    
T  33458149 gttctttctcaactggtagctttatgtctatagttctattcgtatgggaagaagagagagt-ttgccgtgtctagtgtattgaaaatcatagcctcttat 33458247  T
Q  141 a-tattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcat-tgagtccatatcaactaattaaatatttaattaat 237  Q
    | ||||  |||| |||||||||||| | ||||| | |||||||  ||||||||||||||||||  | |||||||||||  ||||||||||||||| ||||    
T  33458248 agtatt--atggtcattagggtttctcgttatttcattaatggatcatccggacatccactcacattagtccatatcagttaattaaatatttaagtaat 33458345  T
Q  238 tatc 241  Q
    ||||    
T  33458346 tatc 33458349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 12183820 - 12183867
Alignment:
Q  33 ctgatttggttcttcctcaaccggtacctttatgcctcaagttctctt 80  Q
    ||||||||||| || |||||||| ||||||||||||||||||||||||    
T  12183820 ctgatttggttatttctcaaccgctacctttatgcctcaagttctctt 12183867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 23254063 - 23253997
Alignment:
Q  47 cctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacg 114  Q
    ||||||||| ||| ||||||| ||||||||| |||| ||||||||||||||| ||||||| |||||||    
T  23254063 cctcaaccg-tacatttatgcatcaagttcttttcatatggggagaagagagtgtattgttgtgtacg 23253997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 26957014 - 26957243
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgta 112  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26957014 tcatcaacggttagcggcgactgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgta 26957113  T
Q  113 cggtatattggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccat 211  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  26957114 cggtatattggggaccatagcctcttttatatttgatggccattagggtttcccattattccgttaatgagccatccggacatccactcattgagtccat 26957213  T
Q  212 atcaactaattaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||||||||||    
T  26957214 atcaactaattaaatatttaattaattatc 26957243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 6257425 - 6257644
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6257425 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 6257524  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||    
T  6257525 ggggaccatagcctcttttatattggatgaccattagggtttccattattccgttaatgggccatccggatatccactcattgagcccatatcaattaat 6257624  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  6257625 taaatatttaattaattatc 6257644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 48167118 - 48166898
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48167118 gttagcggcgactaatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 48167019  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48167018 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccgaacatccactcattgagtccatatcaactaa 48166919  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  48166918 ttaaatatttaattaattatc 48166898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 48160899 - 48160679
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48160899 gttagcggcgactaatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 48160800  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48160799 ggggaccatagcctcttttatatttgatggccattagggtttcccattattccgttaatgggccatccgaacatccactcattgagtccatatcaactaa 48160700  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  48160699 ttaaatatttaattaattatc 48160679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 24287926 - 24287714
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  24287926 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 24287827  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  24287826 gggga-catagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 24287728  T
Q  219 aattaaatatttaa 232  Q
    ||||||||||||||    
T  24287727 aattaaatatttaa 24287714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10733572 - 10733789
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  10733572 gttagcgacggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagt-ttgccgtgtacggtgtatt 10733670  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10733671 ggggaccatagcctc--ttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattaagtccatatcaactaa 10733768  T
Q  221 ttaaatatttaattaattatc 241  Q
    | ||||| |||||||||||||    
T  10733769 tcaaatacttaattaattatc 10733789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10947341 - 10947558
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  10947341 gttagcgacggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagt-ttgccgtgtacggtgtatt 10947439  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  10947440 ggggaccatagcctc--ttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattaagtccatatcaactaa 10947537  T
Q  221 ttaaatatttaattaattatc 241  Q
    | ||||| |||||||||||||    
T  10947538 tcaaatacttaattaattatc 10947558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10739559 - 10739776
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  10739559 gttagcggcggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagt-ttaccgtgtacggtgtatt 10739657  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10739658 ggggaccatagcctc--ttatattggatggccattagggtttcccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaa 10739755  T
Q  221 ttaaatatttaattaattatc 241  Q
    | ||||| |||||||||||||    
T  10739756 tcaaatacttaattaattatc 10739776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 10953328 - 10953545
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||  |||||||||| ||||    
T  10953328 gttagcggcggctgatttggttcttcctcaaccgatacctttatgcctcaaattctcttcagatggggagaagagagagt-ttaccgtgtacggtgtatt 10953426  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  10953427 ggggaccatagcctc--ttatattggatggccattagggtttcccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaa 10953524  T
Q  221 ttaaatatttaattaattatc 241  Q
    | ||||| |||||||||||||    
T  10953525 tcaaatacttaattaattatc 10953545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 71 - 241
Target Start/End: Original strand, 26971824 - 26971994
Alignment:
Q  71 aagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggtttccattat 170  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  26971824 aagttctcttcagatggggagaagagagagtattgccgtgtacggtatattggggaccatagtctcttttatattggatggccattagggtttccattat 26971923  T
Q  171 tccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26971924 tccgttaatggaccatccagacatccactcattgagtccatatcaactaattaaatatttaattaattatc 26971994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 44831838 - 44832054
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||||| |||||||| ||||||||||||||||||||  ||||||||||||||||||||| |||| ||||||||||||||      |||| ||||||||    
T  44831838 ggttagcgacggctgatgtggttcttcctcaaccggtatttttatgcctcaagttctcttcggatgcggagaagagagagtt-----gtgttcggtatat 44831932  T
Q  121 tggggaccatagcctcttttatattggatggccattagggtttcca-ttattccgttaatgggccatccggacatccactcattgagtccatatcaacta 219  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  44831933 tggggaccatagcctcttttatattggatgaccattagggtttccaattattccgttaatggaccatccggacatgcactcattgagtccatatcaacta 44832032  T
Q  220 attaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||    
T  44832033 attaaatatttaattaattatc 44832054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 50168532 - 50168315
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattg 122  Q
    |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||| |||||||||| |||||    
T  50168532 ttagcggcggttgatttagttcttcctcaac-ggtacctttatgcctcaagttctcttcagatggagagaaaagagagttttg-cgtgtacggtgtattg 50168435  T
Q  123 gggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    |||||||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||||    
T  50168434 gggaccatagcctcttttatattgaatgaccattagggttttccattatttcgttaatgggtcattcggtcatccactcattgagtccatatcaactaat 50168335  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  50168334 taaatatttaattaattatc 50168315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 33458487 - 33458662
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  33458487 gttagcggcggctgatttggttctttctcaaccgatacctttatgcctcaagttctcttcagatggggagaagagaaagt-ttgtcgtgtacggtatatt 33458585  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatcca 197  Q
    ||||||||||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||| ||||||||    
T  33458586 ggggaccatagcctcttttatattggatgaccgttagggtttcgcattatttcgttaatgggccatccagacatcca 33458662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 22 - 197
Target Start/End: Original strand, 33461612 - 33461787
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||    
T  33461612 gttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttcttttcagatggggagaagagagagt-ttaccgtgtacggtatatt 33461710  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatcca 197  Q
    |||||||||||||||||||||||||||||  ||| ||||||| ||||||| ||||||||| | ||||||||||||||    
T  33461711 ggggaccatagcctcttttatattggatgatcatcagggtttcccattatcccgttaatgagtcatccggacatcca 33461787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 50155897 - 50155681
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggag-aagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||| ||||| ||| || ||||||||||||||| ||||||| |||||||| |||| |||||||||| ||| |||||||||| ||||    
T  50155897 ttagcggcggctgatttgattctttctcgactggtacctttatgccttaagttcttttcagatgaggagaaagagagagttttg-cgtgtacggtgtatt 50155799  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||| | ||||||||||||||||  ||||| |||||| ||||| | |||||||||  |||||||||||||||||   |||||||||||||||||    
T  50155798 ggggaccataacttcttttatattggatgatcattatggtttctcattagttcgttaatggatcatccggacatccactc---gagtccatatcaactaa 50155702  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  50155701 ttaaatatttaattaattatc 50155681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 22 - 151
Target Start/End: Complemental strand, 4632321 - 4632192
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||||||||| ||||| |||||||    
T  4632321 gttagcggcttctgatttggttcttcctcaaccggtatctttatgcctcaagttctcttcagatgagaagaagagaaagtattgtcatgtactgtatatt 4632222  T
Q  122 ggggaccatagcctcttttatattggatgg 151  Q
    |||||||||| |||||||||||||||||||    
T  4632221 ggggaccataacctcttttatattggatgg 4632192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 35177736 - 35177514
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| |||||||| || || |||||||| ||| |||||||||||||||||||||||||| |||||  |     |||||| ||||||||| ||||    
T  35177736 gttagcggcgcctgatttgattatttctcaaccgatacatttatgcctcaagttctcttcagatgaggagaccatgatttattgttgtgtacggtgtatt 35177637  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactc--attgagtccatatcaact 218  Q
    | |||| ||| |||||||||||||||||| ||||||||||||| ||||||||| ||||| || ||||| ||||| |||||  ||||||||||| |||||     
T  35177636 gaggactataacctcttttatattggatgaccattagggtttctcattattcctttaataggtcatccagacatacactcgtattgagtccatgtcaaca 35177537  T
Q  219 aattaaatatttaattaattatc 241  Q
    |||||||||||||| ||||||||    
T  35177536 aattaaatatttaaataattatc 35177514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 24 - 241
Target Start/End: Original strand, 17627002 - 17627214
Alignment:
Q  24 tagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattgg 123  Q
    ||||| |||||  ||| ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||  ||      |||||| || ||||||    
T  17627002 tagcgacggctagttttgttcttcctcaaccggtacttttatgcttctagttctcttcagatggggagaagagaatgt------gtgtactgtgtattgg 17627095  T
Q  124 ggaccatagcctcttttatattggatggccattagggtttcca-ttattccgttaatgggccatccggacatccactcattgagtccatatcaactaatt 222  Q
    ||| ||| ||||||||||||||  |   |||||||||||| || |||||||||||||||| ||||| ||||||| |||||||||||||||| || ||||     
T  17627096 ggatcatggcctcttttatatttaacaaccattagggttttcaattattccgttaatgggtcatcctgacatcccctcattgagtccatattaattaatc 17627195  T
Q  223 aaatatttaattaattatc 241  Q
    |||||||||||||||||||    
T  17627196 aaatatttaattaattatc 17627214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 49976525 - 49976382
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||        
T  49976525 ggttagcggcggctgatttggttcttcctcaac-ggtac-tttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggt---- 49976433  T
Q  121 tggggaccatagcctcttttatattggatggccattaggg-tttccattatt 171  Q
     || ||||||| |||||||||||||||||||||||||||| |||||||||||    
T  49976432 -ggagaccataacctcttttatattggatggccattagggttttccattatt 49976382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 19686551 - 19686756
Alignment:
Q  32 gctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccata 131  Q
    ||||||||||||| | ||||||||||||| ||||||||||| |||||||  |||| |||||||||||||| ||| | |||  | | ||||| | || |||    
T  19686551 gctgatttggttcgttctcaaccggtaccattatgcctcaatttctcttgggatgaggagaagagagagt-ttgccttgt--gatgtattgag-actata 19686646  T
Q  132 gcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatattt 230  Q
    | |||||||||||||||||| || ||||||||| ||||||| |||||||||| ||||| ||||||||||  |||||| |||||||| ||||||||||||     
T  19686647 gtctcttttatattggatggtcagtagggtttctcattatttcgttaatgggtcatccagacatccactgcttgagttcatatcaattaattaaatattc 19686746  T
Q  231 aattaattat 240  Q
    ||||||||||    
T  19686747 aattaattat 19686756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 32284619 - 32284542
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagaga 99  Q
    ||||| |||| |||||||||||||||||| | ||||||||||| |||||||||| |||||||||| |||||| |||||    
T  32284619 gttagtggcgactgatttggttcttcctcgatcggtacctttaggcctcaagttttcttcagatgaggagaatagaga 32284542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 3769510 - 3769434
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga 97  Q
    |||||| ||||||||||||||||||||||||||| |||  |||||||||  |||||| ||||||| |||||||||||    
T  3769510 ggttagtggcggctgatttggttcttcctcaacccgtatatttatgcctatagttcttttcagatagggagaagaga 3769434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 103 - 235
Target Start/End: Complemental strand, 9237239 - 9237107
Alignment:
Q  103 ttgtcgtgtacggtatattggggaccatagcctcttttatattg-gatggccattagggtttccattattccgttaatgggccatccggacatccactca 201  Q
    |||||||||||  | ||||||| | |||||||||||  ||| || ||||| ||||| |||||||||||| |||||||| || ||||| ||||||||||||    
T  9237239 ttgtcgtgtacaatgtattgggaatcatagcctctt--atagtgtgatggtcattaaggtttccattatcccgttaattggtcatccagacatccactca 9237142  T
Q  202 ttgagtccatatcaact-aattaaatatttaatta 235  Q
    | ||||||||||||  | ||||||||| |||||||    
T  9237141 tagagtccatatcacttcaattaaataattaatta 9237107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 33045184 - 33045107
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagaga 99  Q
    |||| ||||||||||||| |||||| |||||||||||| |||||  |||||||||||||||   | ||||||||||||    
T  33045184 gttaacggcggctgatttagttctttctcaaccggtacttttatatctcaagttctcttcaatcgcggagaagagaga 33045107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 10733466 - 10733507
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtaccttt 63  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  10733466 gttagcgacggctgatttggttcttcctcaaccgataccttt 10733507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 10947235 - 10947276
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtaccttt 63  Q
    ||||||| |||||||||||||||||||||||||| |||||||    
T  10947235 gttagcgacggctgatttggttcttcctcaaccgataccttt 10947276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 50427281 - 50427238
Alignment:
Q  37 tttggttcttcctcaaccggtacctttatgcctcaagttctctt 80  Q
    |||||||||| |||||||||||| |||||||||||| |||||||    
T  50427281 tttggttcttactcaaccggtacatttatgcctcaacttctctt 50427238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 45236543 - 45236479
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 85  Q
    |||||| ||| ||| |||||||||||||||||||| ||| ||| ||  ||||||||| |||||||    
T  45236543 ggttagtggcagctaatttggttcttcctcaaccgatacatttctgtttcaagttctattcagat 45236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 8651023 - 8651243
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8651023 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 8651122  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8651123 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcattaagtccatatcaactaa 8651222  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  8651223 ttaaatatttaattaattatc 8651243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 21197241 - 21197480
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcg---- 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||        
T  21197241 tcatcaacggttagcggcggctgatttggttcttcctcaaccggtatctttatgcctcaagttctcttcagatggggagaagagagagtattgccgagta 21197340  T
Q  109 ------tgtacggtatattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactca 201  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  21197341 ttgccgtgtacggtatattggggaccatagcctcttttatattggatggccattaggttttcccattattccgttaatgggccatccggacatccactca 21197440  T
Q  202 ttgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21197441 ttgagtccatatcaactaattaaatatttaattatttatc 21197480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 4580541 - 4580757
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  4580541 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 4580640  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||  |||||||||||||||||    
T  4580641 ggggaccatagcctcttttatattggatggccattagggtttcccattattccattaatgggtcatccggacatccactcatgttgagtccatatcaact 4580740  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  4580741 aattaaataattaatta 4580757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 21191086 - 21191309
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctca---agttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||| |||||| |||||    
T  21191086 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcatcaagttctcttcagatggggagaagagagagtattgccgtgtaaggtat 21191185  T
Q  119 attggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaac 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  21191186 attggggaccatagcctcttttatattggatggccattatggtttcacattattccgttaatgggccatccgaacatccactcattgaatccatatcaac 21191285  T
Q  218 taattaaatatttaattaattatc 241  Q
    |||||||||||||||||| |||||    
T  21191286 taattaaatatttaattatttatc 21191309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 25354151 - 25353935
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25354151 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtgtatt 25354052  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||| |||| ||||||| |||| |||||||||||||||||||||||||||| |||||||||  |||||||||||||||||    
T  25354051 ggggaccatagcctcttttatattagatgaccattagagtttcccattattccgttaatgggccatccggatatccactcatgttgagtccatatcaact 25353952  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  25353951 aattaaataattaatta 25353935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 21770778 - 21771003
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgta 112  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||| ||||||    
T  21770778 tcatcaacggttagcagcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat--ggagaagagagagttttgccgtgta 21770875  T
Q  113 cggtatattggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccat 211  Q
    |||| ||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||||    
T  21770876 cggtgtattggggaccgtagcctcttttatattggttggccattagggtttcccattattccgttaat-ggtcatccggacatccactcattaagtccat 21770974  T
Q  212 atcaactaattaaatatttaattaattat 240  Q
    |||||||||||||||||||||||||||||    
T  21770975 atcaactaattaaatatttaattaattat 21771003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 25343564 - 25343349
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  25343564 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtgtatt 25343465  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    ||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| |||||||||||  |||||||||||||||||    
T  25343464 gggga-catagcctcttttatattggatgaccattagggtttcccattattccgttaatggaccatccgaacatccactcatgttgagtccatatcaact 25343366  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  25343365 aattaaataattaatta 25343349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 31756439 - 31756658
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||  | |||||    
T  31756439 ggttagcggcggctgatttggttcttcctcaacaggtacctttatacctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtttgatatat 31756537  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaacta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  31756538 tggggaccatagcctcttttatattggatggccattagggtttcccattattcc-ttaatgggtcatccggacatccactcattgagtccatatcaacta 31756636  T
Q  220 attaaatatttaattaattatc 241  Q
    ||||| ||||||||||||||||    
T  31756637 attaattatttaattaattatc 31756658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 21783529 - 21783765
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccgg------tacctttatgcctcaagttctcttcagatggggagaagagagagtattgt 106  Q
    ||||||||||||| | ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||     
T  21783529 tcatcaacggttaacagcggctgatttggttcttcctcaaccggcacctttacctttatgcctcaagttctcttcagatggggagaagagagagttttgc 21783628  T
Q  107 cgtgtacggtatattggggac--catagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcatt 203  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21783629 cgtgtacggtgtattggggacaccatagcctcttttatattggatg-ccattagggtttcccattattccgttaatgggtcatccggacatccactcatt 21783727  T
Q  204 gagtccatatcaactaattaaatatttaattaattatc 241  Q
     |||||||||||||||||||||||||||||||||||||    
T  21783728 aagtccatatcaactaattaaatatttaattaattatc 21783765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 21789752 - 21789988
Alignment:
Q  13 tcatcaacggttagcggcggctgatttggttcttcctcaaccgg------tacctttatgcctcaagttctcttcagatggggagaagagagagtattgt 106  Q
    ||||||||||||| | ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||| |||     
T  21789752 tcatcaacggttaacagcggctgatttggttcttcctcaaccggcacctttacctttatgcctcaagttctcttcagatggggagaagagagagttttgc 21789851  T
Q  107 cgtgtacggtatattggggac--catagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcatt 203  Q
    |||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  21789852 cgtgtacggtgtattggggacaccatagcctcttttatattggatg-ccattagggtttcccattattccgttaatgggtcatccggacatccactcatt 21789950  T
Q  204 gagtccatatcaactaattaaatatttaattaattatc 241  Q
     |||||||||||||||||||||||||||||||||||||    
T  21789951 aagtccatatcaactaattaaatatttaattaattatc 21789988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 14 - 213
Target Start/End: Complemental strand, 17581580 - 17581384
Alignment:
Q  14 catcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtac 113  Q
    ||||||||||||| ||| ||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17581580 catcaacggttagtggcagctgatttggttcttcctcaacttgtacatttatgcctcaagttctcttcagatggggagaagagagagttttgtcgtgtac 17581481  T
Q  114 ggtatattggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatat 213  Q
     ||   ||||||||||||||||||||||||||||| ||  |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17581480 agt---ttggggaccatagcctcttttatattggacggttattaggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatat 17581384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 41 - 241
Target Start/End: Original strand, 30905821 - 30906020
Alignment:
Q  41 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctctttt 140  Q
    ||||||||||||  ||||  ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||||||| |||||||||||||||    
T  30905821 gttcttcctcaattggtatatttatgcctcaagttctcttcagatgggg-gaagagagagt-ttgtcgagtacggtgtattgggaaccatagcctctttt 30905918  T
Q  141 atattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaatta 239  Q
    |||||||||| |||||| ||||||| ||||||| ||||| ||  ||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  30905919 atattggatgaccattatggtttcccattattctgttaaaggatcatccagacatctactcatagagtccatatcaactaattaaatatttaattaatta 30906018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 25 - 198
Target Start/End: Complemental strand, 28728218 - 28728047
Alignment:
Q  25 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggg 124  Q
    ||||||||||  || ||||||||||||||||||||||  |||||  || | | ||||||||||||||||||| | || |||  |||||||||||||||||    
T  28728218 agcggcggctagttaggttcttcctcaaccggtacctcgatgccctaa-tgcgcttcagatggggagaagagcg-gttttgctgtgtacggtatattggg 28728121  T
Q  125 gaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccac 198  Q
    |||||||||||| || |||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  28728120 gaccatagcctcatt-atataggatggccattagggtttcccattattccgttaatggaccatccggacatccac 28728047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 1106206 - 1106034
Alignment:
Q  68 ctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggttt-cca 166  Q
    ||||||||||||||| || ||||||||||| ||| ||| ||||||| ||||  ||||||||||| |||| |||||| |  |||  ||||| ||||| |||    
T  1106206 ctcaagttctcttcacatagggagaagagaaagttttgacgtgtacagtat--tggggaccatatcctcatttatactcaatgatcattacggttttcca 1106109  T
Q  167 ttattccgttaatgggccatccggacatccactcattgagtccatatcaactaa-ttaaatatttaattaattat 240  Q
    ||||| |||||||| | |||||||||||||||||||||| ||||||| || ||| ||||||||||||||||||||    
T  1106108 ttatttcgttaatgagtcatccggacatccactcattgaatccatattaattaatttaaatatttaattaattat 1106034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 205 - 241
Target Start/End: Complemental strand, 6097067 - 6097031
Alignment:
Q  205 agtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||||||||||||||||    
T  6097067 agtccatatcaactaattaaatatttaattaattatc 6097031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 87
Target Start/End: Complemental strand, 20745496 - 20745431
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatgg 87  Q
    |||||||| | || |||||||| |||||||| |||||| |||| ||| ||||||||||||||||||    
T  20745496 gttagcggtgactaatttggtttttcctcaatcggtacttttaagccccaagttctcttcagatgg 20745431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 17581356 - 17581324
Alignment:
Q  209 catatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||||||||||||    
T  17581356 catatcaactaattaaatatttaattaattatc 17581324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 12801889 - 12801940
Alignment:
Q  152 ccattagggtttcc-attattccgttaatgggccatccggacatccactcat 202  Q
    |||||||||||||| |||||||| |||||||| ||||| |||||||||||||    
T  12801889 ccattagggtttcccattattccattaatgggtcatccagacatccactcat 12801940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 131
Target Start/End: Original strand, 17900378 - 17900472
Alignment:
Q  35 gatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccata 131  Q
    |||| ||||||||||| || ||| | |||||||||||||||||||||| ||  | ||||||||||  | |||| |||||| | ||||||||||||||    
T  17900378 gattcggttcttcctctactggtgc-tttatgcctcaagttctcttcatatccgaagaagagagaaca-tgtcatgtacgatgtattggggaccata 17900472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 5542380 - 5542600
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  5542380 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 5542479  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5542480 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatatcaactaa 5542579  T
Q  221 ttaaatatttaattaattatc 241  Q
    ||||||||||||||| |||||    
T  5542580 ttaaatatttaattatttatc 5542600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 22219947 - 22220167
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22219947 gttagtggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 22220046  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22220047 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccattcattgagtccatatcaactaa 22220146  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  22220147 ttaaatatttaattaattatc 22220167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 10705777 - 10705559
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10705777 gttagcggcggctgatttgattcttcctcaaccggtacctttatggcttaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 10705678  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    || ||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10705677 ggagaccatagcctcttttatatttgatgactattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 10705578  T
Q  222 taaatatttaattaattat 240  Q
    |||||||||||||||||||    
T  10705577 taaatatttaattaattat 10705559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 32890828 - 32890612
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32890828 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 32890729  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  32890728 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 32890629  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  32890628 aattaaataattaatta 32890612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 32896952 - 32896736
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32896952 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 32896853  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  32896852 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 32896753  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  32896752 aattaaataattaatta 32896736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 10699969 - 10699749
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||    
T  10699969 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttttcgtcagatggagagaagagagagtattgccgtgtacggtatatt 10699870  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||| |||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10699869 ggggaccatagtctcttttatatttgatgaccattagggtttcccattactccgttaatgggtcatccggacatccactcattgagtccatatcaactaa 10699770  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  10699769 ttaaatatttaattaattatc 10699749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 36818911 - 36818696
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||    
T  36818911 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcatcagatggggagaagagagagt-ttgccgtgtacggtatatt 36818813  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36818812 ggggaccatagcctcttttatatttgatagccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 36818713  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  36818712 aattaaataattaatta 36818696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 241
Target Start/End: Complemental strand, 42033743 - 42033517
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||  | |    
T  42033743 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggagagaagagagagt-ttgccgtgtacaatgt 42033645  T
Q  119 attggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaat----gggccatccggacatccactcattgagtccatat 213  Q
    |||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||    
T  42033644 attggggaccatagcctcctttatattggatgaccattagggtttcccattattccgttaatgggcgggccatccggacatccactcattgagtccatat 42033545  T
Q  214 caactaattaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||||||||    
T  42033544 caactaattaaatatttaattaattatc 42033517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 42993223 - 42993435
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||| ||||| |||||||||    
T  42993223 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaa---agagtattgccgtgttcggtatatt 42993319  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||||||||    
T  42993320 ggggaccataacctcttttatattggatggcgattagggtttcccattattccgttaatgggccat-cggacatccactcatgttgagtccatatcaact 42993418  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  42993419 aattaaataattaatta 42993435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 39735767 - 39735978
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||||||||||||||||| |||||||| ||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||       
T  39735767 ggttagcggcggctgatttgattcttccttaactggtacatttatgcctcaagtactcttcagatggggagaagagagagttttgtcgtgtacggta--- 39735863  T
Q  121 tggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
          ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  39735864 ------ccagagcctcttttatattagatggccattagggtttcccttattccgttaatgggtcatccggacatccactgattgagtccatatcaactaa 39735957  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  39735958 ttaaatatttaattaattatc 39735978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 235
Target Start/End: Complemental strand, 9935217 - 9935007
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattg 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||| |||||    
T  9935217 ttagcggcggctgatttggttcttcctcaatcggtacctttatgcctcaagttctcttcagatggggagaagagag---tttgtcgtgtacggtgtattg 9935121  T
Q  123 gggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaactaa 220  Q
    |||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||| |||||||| |||||||||  |||||||||||||||  ||    
T  9935120 gggaccatagcctcttttat-ttggatggccattaggtttcccattattccgttaatgggtcatccggatatccactcatgttgagtccatatcaataaa 9935022  T
Q  221 ttaaatatttaatta 235  Q
    ||||||| |||||||    
T  9935021 ttaaataattaatta 9935007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 14417879 - 14417681
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattg 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  14417879 ttagcggcggctgatttggttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtgtattg 14417781  T
Q  123 gggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaatt 222  Q
    ||||||||||||||||||                    || |||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  14417780 gggaccatagcctctttt-------------------tttcccattatttcgttaatgggacatccgaacatccactcattgagcccatatcaactaatt 14417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 39727527 - 39727645
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||    
T  39727527 ggttagcggctgctgatttggttcttcctcaaccggtacctttatgcctcaagtactcttgagatggggagaagagagagttttgttgtgtacggtatat 39727626  T
Q  121 tggggaccatagcctcttt 139  Q
    ||||||||||| |||||||    
T  39727627 tggggaccatatcctcttt 39727645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 1883036 - 1883151
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| ||||||  || |    
T  1883036 acggttagcggcggctaatttggttcttcctcaaccagtacctttatgtctcaagttctcttcagatggggagaagagaaagt-ttgccgtgtattgtgt 1883134  T
Q  119 attggggaccatagcct 135  Q
    |||||||||||||||||    
T  1883135 attggggaccatagcct 1883151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 164 - 241
Target Start/End: Original strand, 39727647 - 39727724
Alignment:
Q  164 ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  39727647 ccattgttccgttaatgggctatccggacatccactcattgagtccatatcaattaattaaatatttaattaattatc 39727724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 161 - 239
Target Start/End: Complemental strand, 17954308 - 17954228
Alignment:
Q  161 tttccattattccgttaatgggccatccggacatccactcatt--gagtccatatcaactaattaaatatttaattaatta 239  Q
    ||||||||||||||||| |||| |||| | |||||||||||||  ||||||||||||||||||||| || |||||||||||    
T  17954308 tttccattattccgttagtgggtcatctgaacatccactcattttgagtccatatcaactaattaattaattaattaatta 17954228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 1883185 - 1883267
Alignment:
Q  145 tggatggccattagggtttcc-attattccgttaatgggccatccggacatccactc--attgagtccatatcaactaattaa 224  Q
    ||||||||||||| ||||||| |||||| |||||||||| |||||||||||||||||  |||||||||||||| | |||||||    
T  1883185 tggatggccattaaggtttcccattatttcgttaatgggtcatccggacatccactcatattgagtccatatccattaattaa 1883267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 1171290 - 1171249
Alignment:
Q  17 caacggttagcggcggctgatttggttcttcctcaaccggta 58  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  1171290 caacggttagcggcggctgatttggttcttcctcaaccggta 1171249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 101
Target Start/End: Complemental strand, 1171249 - 1171220
Alignment:
Q  72 agttctcttcagatggggagaagagagagt 101  Q
    ||||||||||||||||||||||||||||||    
T  1171249 agttctcttcagatggggagaagagagagt 1171220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 11641456 - 11641424
Alignment:
Q  209 catatcaactaattaaatatttaattaattatc 241  Q
    |||||||| ||||||||||||||||||||||||    
T  11641456 catatcaattaattaaatatttaattaattatc 11641424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 3811389 - 3811608
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  3811389 gttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtatatt 3811487  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3811488 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 3811587  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  3811588 ttaaatatttaattaattatc 3811608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 3817531 - 3817750
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  3817531 gttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtatatt 3817629  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817630 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 3817729  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  3817730 ttaaatatttaattaattatc 3817750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 351726 - 351507
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  351726 gttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtacggtatatt 351628  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  351627 ggggaccatagcctcttttatattggatggccattagggtttcccattattccagtaatgggccatccggacatccactcattgagtccatatcaactaa 351528  T
Q  221 ttaaatatttaattaattatc 241  Q
    ||||||||||||||| |||||    
T  351527 ttaaatatttaattatttatc 351507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 339319 - 339101
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  339319 gttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtacggtatatt 339221  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    |||||||||  ||||||||||||||||||||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  339220 ggggaccatgacctcttttatattggatggccattaggtttcccattattccagtaatgggccatccggacatccactcattgagtccatatcaactaat 339121  T
Q  222 taaatatttaattaattatc 241  Q
    |||||||||||||| |||||    
T  339120 taaatatttaattatttatc 339101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 28421179 - 28421394
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  28421179 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtgtatt 28421277  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  28421278 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 28421377  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  28421378 aattaaataattaatta 28421394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 22742146 - 22742369
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||| | ||||||||||    
T  22742146 acggttagcggcggctgatttggtttttcatcaactggtacctttatgcctcaagttctcttcagattgggagaagagagagttttgccatgtacggtat 22742245  T
Q  119 attggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaac 217  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22742246 attggagaccatagtctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaac 22742345  T
Q  218 taattaaatatttaattaattatc 241  Q
    || ||| |||||||||||||||||    
T  22742346 tacttatatatttaattaattatc 22742369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 5849469 - 5849250
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |||||||||||||||    
T  5849469 gttagcggcgtctgatttggttcttcctcaaccggtacctttatgcctcaagttatcttcagatggggagaaaagagagt-ttgccgtgtacggtatatt 5849371  T
Q  122 ggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    | ||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  5849370 gaggaccatagcctcttttatattggatgaccattaaggtttctcattattccgttaatggaccatccgaacatccactcattgagtccatatcaactaa 5849271  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  5849270 ttaaatatttaattaattatc 5849250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 35148236 - 35148448
Alignment:
Q  29 gcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggacc 128  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||||| ||||||||| |    
T  35148236 gcggctgatttggttcttcctcaaccggtacctttatgcctcaaattctcttcagatggggagaagagagagt-ttgccatgtacggtgtattggggatc 35148334  T
Q  129 atagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaata 227  Q
    |||||||||||||||||||||||||||||| |||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35148335 atagcctcttttatattggatggccattagagtttcccattattctgttaatgagccatccggacatccactcattgagtccatatcaactaattaaata 35148434  T
Q  228 tttaattaattatc 241  Q
    ||||||||||||||    
T  35148435 tttaattaattatc 35148448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 5979394 - 5979611
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5979394 gttagcggcgactaatttggttcttcctcaaccggtacttttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtgtatt 5979493  T
Q  122 ggggaccatagcctctttta-tattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaac 217  Q
    |||||||||| ||||||||| ||||||||| |||||||  ||| ||||||||| |||||| ||||||||| |||||||  ||  ||||||||||||||||    
T  5979494 ggggaccataacctcttttattattggatgaccattagactttcccattattctgttaattggccatccgaacatccatccatgttgagtccatatcaac 5979593  T
Q  218 taattaaatatttaatta 235  Q
    |||||||||| |||||||    
T  5979594 taattaaataattaatta 5979611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 43539920 - 43539709
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatgg---ggagaagagagagtattgtcgtgtacggta 117  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||   |||||||||||||| ||| |||| ||||||    
T  43539920 ggttagcggcgactgatttggttcttcctcaaccagtacctttatgcctaaagttctcttcagatgggaaggagaagagagagt-ttgccgtgcacggta 43539822  T
Q  118 tattggggaccatagcctcttttatattggatggccattaggg-tttccattattccgttaatgggccatccggacatccactcattgagtccatatcaa 216  Q
    |||||||||||||| ||||||||||||||| || ||||||||| ||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  43539821 tattggggaccataacctcttttatattgggtgaccattagggttttccgttattccgttaatgggtcatccagacatccactcattgagtccatatcaa 43539722  T
Q  217 ctaattaaatatt 229  Q
     ||||||||||||    
T  43539721 ttaattaaatatt 43539709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 20238890 - 20238762
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20238890 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatatt 20238791  T
Q  122 ggggaccatagcctcttttatattggatg 150  Q
    |||||||||||||||||||||||||||||    
T  20238790 ggggaccatagcctcttttatattggatg 20238762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 61 - 241
Target Start/End: Complemental strand, 26383569 - 26383389
Alignment:
Q  61 tttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattaggg 160  Q
    |||||||||||||||||||||| || ||||||||||||||| ||| ||||| |||| |||| |||||||||||||||||||||||||||| |||||||||    
T  26383569 tttatgcctcaagttctcttcaaatagggagaagagagagt-ttgccgtgtccggtgtattagggaccatagcctcttttatattggatgaccattaggg 26383471  T
Q  161 tttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  26383470 tttcccattattccattaatgggtcatccggacatccactcattgagtccatattcattaattaaatatttaattaattatc 26383389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 35152849 - 35152968
Alignment:
Q  123 gggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaat 221  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35152849 gggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatatcaactaat 35152948  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  35152949 taaatatttaattaattatc 35152968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 15843886 - 15843730
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgta-cggtatat 120  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| |||    
T  15843886 gttagcggcggctgatttggttcttcctcaactggtacatttatgcctcaagttctcttcagatggggagaatagagagt-ttgccgtgtaccggtgtat 15843788  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgtta 177  Q
    ||| ||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||    
T  15843787 tggagaccataacctcttttatattggatgaccattagagtttcccattattccgtta 15843730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 22 - 177
Target Start/End: Complemental strand, 15860995 - 15860839
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgta-cggtatat 120  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||| |||| |||    
T  15860995 gttagcggcggctgatttggttcttcctcaactggtacatttatgcctcaagttctcttcagatggggagaatagagagt-ttgccgtgtaccggtgtat 15860897  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgtta 177  Q
    ||| ||||||| |||||||||||||||||| ||||||| |||| ||||||||||||||    
T  15860896 tggagaccataacctcttttatattggatgaccattagagtttcccattattccgtta 15860839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 98 - 241
Target Start/End: Original strand, 42767500 - 42767642
Alignment:
Q  98 gagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatcc 196  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||| ||||||||||||||||  ||||| |||||||    
T  42767500 gagtattgccgtgtacggtatattcgggaccatagcctcttttatat---atggccattagggtttcctattattccgttaatggatcatccagacatcc 42767596  T
Q  197 actcattg-agtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  42767597 actcattgaagtccatatcaactaattaaatatttaattaattatc 42767642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 26381023 - 26380830
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||| ||||||||||||||| |||||||||  | | || |    
T  26381023 gttagcggcggctgatttggttcttcctcaactgctacctttatgcctaaagttttcttcagatcgggagaagagagagt-ttgtcgtgtctgatgtact 26380925  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||| ||||||||||||||||| |||||| | ||| |||||||       ||||| ||||||||||| |||||||||||| |||||||| |||    
T  26380924 ggggaccatag-ctcttttatattggatgaccattaagatttcccattat-------atgggtcatccggacatgcactcattgagttcatatcaattaa 26380833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 35150760 - 35150865
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||| |||    
T  35150760 ggttagcggcggctgatttggttattcttcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccatgtacggtgtat 35150858  T
Q  121 tggggac 127  Q
    |||||||    
T  35150859 tggggac 35150865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 241
Target Start/End: Complemental strand, 7608381 - 7608146
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatgggg-agaagagagagtat--------------tgtc 107  Q
    ||||||||| |||||||||| |||||| || ||||||||||||| |||||||||||||| ||||||| ||||||||   |||              ||||    
T  7608381 ttagcggcgactgatttggtacttcctaaatcggtacctttatgactcaagttctcttccgatgggggagaagagactttatgactcaagttctcttgtc 7608282  T
Q  108 gtgtacggtatattggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgag 206  Q
     ||| |||| |||||||||||||| | ||||||||||||||||| |||||||||||  ||||||| | |||||||| |||||||||||||||||||| |     
T  7608281 ttgtccggtgtattggggaccataacatcttttatattggatggtcattagggtttttcattatttcattaatgggtcatccggacatccactcattaac 7608182  T
Q  207 tccatatcaactaatt-aaatatttaattaattatc 241  Q
     ||||||||||||||| |||||||||||||||||||    
T  7608181 cccatatcaactaattaaaatatttaattaattatc 7608146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 18656869 - 18657085
Alignment:
Q  18 aacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggta 117  Q
    |||||||||||   |||||||||||||||||||||| | ||| |||||| ||  ||||||||||||| || ||||||||| ||| |||||||||| |||     
T  18656869 aacggttagcgaaagctgatttggttcttcctcaactgttacttttatgtctttagttctcttcagacggagagaagagaaagt-ttgtcgtgtatggtg 18656967  T
Q  118 tattggggaccatagcctcttttatattg-gatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatca 215  Q
     ||||| ||| ||||||||  ||| | || ||| ||||||||| ||| ||||||||   |||||||| ||||| ||||||||||||| |||||||||| |    
T  18656968 cattggagacaatagcctc--ttacagtgtgat-gccattaggatttaccattattgtattaatgggtcatccagacatccactcatagagtccatatta 18657064  T
Q  216 actaa-ttaaatatttaatta 235  Q
    | ||| ||||||| |||||||    
T  18657065 attaatttaaataattaatta 18657085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 97
Target Start/End: Complemental strand, 3677952 - 3677889
Alignment:
Q  34 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagaga 97  Q
    ||||||| |||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||    
T  3677952 tgatttgtttcttcctcaaccgatacttttatgcctcaatttctcttcagatggagagaagaga 3677889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 12803939 - 12803893
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgc 67  Q
    |||||||| || |||||| ||||||||||||||||||||||||||||    
T  12803939 ggttagcgacgactgattaggttcttcctcaaccggtacctttatgc 12803893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 24690882 - 24690848
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccg 55  Q
    |||||||||||||||||||||||||||||||||||    
T  24690882 ggttagcggcggctgatttggttcttcctcaaccg 24690848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 8824701 - 8824535
Alignment:
Q  56 gtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccat 155  Q
    |||| ||| ||||||| ||||||||||   ||||||||||||| || || |||||||  |||| ||||||||||| | ||||| || ||  ||||| |||    
T  8824701 gtacttttttgcctcatgttctcttcaa--ggggagaagagag-gttttttcgtgtagagtatgttggggaccatggtctcttata-atgtgatggtcat 8824606  T
Q  156 tagggtttc-cattattccgttaatgggccatccggacatccactcat--tgagtccatatcaactaattaa 224  Q
    || |||||| ||||||||||||| || | ||||| |||||||||||||  ||||||||||| || |||||||    
T  8824605 taaggtttctcattattccgtta-tgagtcatccagacatccactcatattgagtccatattaattaattaa 8824535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 18666881 - 18666918
Alignment:
Q  200 cattgagtccatatcaactaattaaatatttaattaat 237  Q
    |||||||||||||||||||||||||| |||||||||||    
T  18666881 cattgagtccatatcaactaattaaaaatttaattaat 18666918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 15843724 - 15843687
Alignment:
Q  118 tattggggaccatagcctcttttatattggatggccat 155  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  15843724 tattggggaccataacctcttttatattggatgaccat 15843687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 15860833 - 15860796
Alignment:
Q  118 tattggggaccatagcctcttttatattggatggccat 155  Q
    |||||||||||||| |||||||||||||||||| ||||    
T  15860833 tattggggaccataacctcttttatattggatgaccat 15860796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 229
Target Start/End: Complemental strand, 24690743 - 24690650
Alignment:
Q  134 ctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcat--tgagtccatatcaactaattaaatatt 229  Q
    |||||||||||| ||||  | ||||| ||  |||||||| ||||||||| ||    |||||||||||||  ||||||||||| |||||||||||||||    
T  24690743 ctcttttatattagatgatcgttaggtttctcattattctgttaatgggtca----gacatccactcatattgagtccatattaactaattaaatatt 24690650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 30965267 - 30965047
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30965267 gttagcggcgactaatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 30965168  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30965167 ggggaccatagcctcttttatattagatggccattaggatttcccattattccgttaatgggccatccggacatccactcattgaatccatatcaactaa 30965068  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  30965067 ttaaatatttaattaattatc 30965047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 31002316 - 31002096
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31002316 gttagcggcgactaatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgttgtgtacggtatatt 31002217  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31002216 ggggaccatagcctcttttatattggatggccattatggtttcccattattccgttaatgggtcatccggacatccactcattgagtccatatcaactaa 31002117  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  31002116 ttaaatatttaattaattatc 31002096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 44717025 - 44717245
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  44717025 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagatagtattgccgtgtacggtgtatt 44717124  T
Q  122 ggggaccatagcctcttttatattggatggccattaggg-tttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44717125 ggggaccatagcctcttttatattggatggtcattagggttttccattattccgttaatgggccatccggacatccactcattaagtccatatcaactaa 44717224  T
Q  221 ttaaatatttaattaattatc 241  Q
    ||| |||||||||||||||||    
T  44717225 ttatatatttaattaattatc 44717245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 35084898 - 35085115
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35084898 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatat 35084997  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaac 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  35084998 tggggaccatagcctcttttatattggatagccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaac 35085097  T
Q  218 taattaaatatttaatta 235  Q
    |||||||||| |||||||    
T  35085098 taattaaataattaatta 35085115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 29 - 241
Target Start/End: Original strand, 28683172 - 28683384
Alignment:
Q  29 gcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggacc 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  28683172 gcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtatattggggacc 28683270  T
Q  129 atagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaata 227  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  28683271 atagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatg 28683370  T
Q  228 tttaattaattatc 241  Q
    |||||||| |||||    
T  28683371 tttaattatttatc 28683384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 31008294 - 31008074
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31008294 gttagcggcgactaatttggttcttcctcaaccggtacttttatgcctcaagttctcttcagatggggagaagagagagtattgttgtgtacggtatatt 31008195  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  31008194 ggggaccatagcctcttttatattggatggccattatggtttcccattattccgttaatgggtcattcggacatccactcattgagtccatatcaactaa 31008095  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  31008094 ttaaatatttaattaattatc 31008074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 21 - 235
Target Start/End: Original strand, 35090871 - 35091088
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35090871 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtatat 35090970  T
Q  121 tggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaac 217  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  35090971 tggggaccatagcctcttttatattggatagccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtctatatcaac 35091070  T
Q  218 taattaaatatttaatta 235  Q
    |||||||||| |||||||    
T  35091071 taattaaataattaatta 35091088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 13456039 - 13455823
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13456039 gttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 13455940  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  13455939 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 13455840  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  13455839 aattaaataattaatta 13455823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 13461980 - 13461764
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  13461980 gttagcggtggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 13461881  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  13461880 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 13461781  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  13461780 aattaaataattaatta 13461764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 22 - 232
Target Start/End: Complemental strand, 36750354 - 36750141
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36750354 gttagcggcggctgatttggttcttcctcaaccggtatctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtgtatt 36750255  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  36750254 ggagaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 36750155  T
Q  219 aattaaatatttaa 232  Q
    ||||||||| ||||    
T  36750154 aattaaataattaa 36750141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 13149904 - 13150129
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggg-----gagaagagagagtattgtcgtgtacggt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     ||||||||||| ||||| ||||||||||    
T  13149904 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatgagatgaggagaagagagaatattgccgtgtacggt 13150003  T
Q  117 atattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatca 215  Q
    ||||||||||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  13150004 atattggggaccataacctcttttatattagatgaccattagggtttcccattattccgttaatgggtcatccgtacatccactcattgagtccatatca 13150103  T
Q  216 actaattaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||||||    
T  13150104 actaattaaatatttaattaattatc 13150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 11048776 - 11048994
Alignment:
Q  27 cggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagta---ttgtcgtgtacggtatattgg 123  Q
    ||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    ||| |||||||| | ||||||    
T  11048776 cggcgactaatttggttcttcctcaactggtacctttatgcctcaagttctcttcagatggggagaagagagagttggtttgccgtgtacgatgtattgg 11048875  T
Q  124 ggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaatt 222  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  11048876 ggaccatagcctcttttatattggatcgccattagggtttcccattattccgttaatgggtcatccagacatccacccattgagtccatatcaactaatt 11048975  T
Q  223 aaatatttaattaattatc 241  Q
    |||||||||||||||||||    
T  11048976 aaatatttaattaattatc 11048994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 23343496 - 23343290
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||| |    
T  23343496 acggttagcagcggctgatttggttcttcctcaaccgatacctttatgcctcaagttctcttcagatggggagaagagagagt-ttcccgtgtacggtgt 23343398  T
Q  119 attggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccac--tcattgagtccatatcaa 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||    |||||||||||||| |    
T  23343397 attggggaccatagcctcttttatattggatggtcattagggtttccattattctgttaatgggtcatccggacatccacctatattgagtccatatcca 23343298  T
Q  217 ctaattaa 224  Q
     |||||||    
T  23343297 ttaattaa 23343290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 24 - 241
Target Start/End: Complemental strand, 19879536 - 19879314
Alignment:
Q  24 tagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattgg 123  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| | ||||||    
T  19879536 tagcggcggctgatttgattcttcttcaatcggtacctttatgcctcaagttctcttcagatggggagaagagagagttttgccgtgtacgatgtattgg 19879437  T
Q  124 ggaccatagcctctt-----ttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaact 218  Q
     ||||||| ||||||     ||||||||||||||||||| | || ||||||||||||||||||| |||| |||||| ||||||||||||| ||||||| |    
T  19879436 cgaccataacctcttttatgttatattggatggccattaagtttcccattattccgttaatgggtcatctggacattcactcattgagtcaatatcaatt 19879337  T
Q  219 aattaaatatttaattaattatc 241  Q
    ||||||||||||||||| |||||    
T  19879336 aattaaatatttaattatttatc 19879314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 101 - 241
Target Start/End: Original strand, 35439669 - 35439810
Alignment:
Q  101 tattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccact 199  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  35439669 tattgccgtgtacggtatattggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccact 35439768  T
Q  200 cattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||| ||| |||||||||||||||||||||||||||||||||    
T  35439769 cattaagttcatatcaactaattaaatatttaattaattatc 35439810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 35438917 - 35439004
Alignment:
Q  14 catcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35438917 catcaacggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt 35439004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 35442192 - 35442272
Alignment:
Q  161 tttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35442192 tttccattattccgttaatgggtcatccggacatccactcattaagtccatatcaactaattaaatatttaattaattatc 35442272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 241
Target Start/End: Original strand, 7771508 - 7771626
Alignment:
Q  123 gggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagt-ccatatcaactaat 221  Q
    ||||||||| ||| |||||||||||||| | |||||| || ||||||||| ||||||||| ||||||||| ||||||||| |||| || |||||||||||    
T  7771508 gggaccataacct-ttttatattggatgacgattaggtttcccattattctgttaatgggtcatccggacgtccactcatcgagtcccgtatcaactaat 7771606  T
Q  222 taaatatttaattaattatc 241  Q
    ||||||||||||||||||||    
T  7771607 taaatatttaattaattatc 7771626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 29833143 - 29832925
Alignment:
Q  21 ggttagcggcggctga-tttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtata 119  Q
    |||||||||||||| | ||||||||||||||||||| ||| ||||| | ||||||||||||||||  | ||||| | ||||| ||||||||       ||    
T  29833143 ggttagcggcggctaaatttggttcttcctcaaccgatacatttatccttcaagttctcttcagacagagagaatatagagttttgtcgtg-------ta 29833051  T
Q  120 ttggggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccact------cattgagtccata 212  Q
    |||||||||||||   | ||||||| | ||| ||||||||||||| |||||||| ||| ||||| ||| | ||||| ||||      |||||||||||||    
T  29833050 ttggggaccatag---catttatatcgaatgaccattagggtttctcattattctgttgatgggtcattctgacattcactcattcccattgagtccata 29832954  T
Q  213 tcaactaattaaatatttaattaattatc 241  Q
    |||| ||||||||||||||||||||||||    
T  29832953 tcaattaattaaatatttaattaattatc 29832925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 31651565 - 31651351
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||| || ||||||||||||| || |||   ||||||||    ||||||| ||||||||||||||||||| ||||| ||| ||      ||||||    
T  31651565 ggttagcggagggtgatttggttctttcttaactaatacctttaaatatcaagttatcttcagatggggagaagaaagagttttgccg------gtatat 31651472  T
Q  121 tggggaccatagcctcttttatattg-gatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaact 218  Q
    |||||||| || ||||||  ||  || ||||| ||||| ||||||| |||||||  |||||||  ||||  |||||| |||||||||||||||||||| |    
T  31651471 tggggaccgtaacctctt--atggtgtgatggtcattaaggtttcccattattcttttaatggatcatctagacatcgactcattgagtccatatcaatt 31651374  T
Q  219 aattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||    
T  31651373 aattaaatatttaattaattatc 31651351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 23 - 85
Target Start/End: Complemental strand, 29034759 - 29034697
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagat 85  Q
    ||||||| |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||    
T  29034759 ttagcggtggctgatttgattcttcctcaactggtacctttatgtctcaagttctcttcagat 29034697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 28765508 - 28765341
Alignment:
Q  34 tgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagc 133  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||||| ||  | ||||| | |  || |||||||||| ||| || |||| ||||| ||    
T  28765508 tgatttggttcttcctcaataggtaccttgatgcctcaaattctcttcggaatgagagaatataatgt-ttgtcgtgtatggtgtaatggg-accattgc 28765411  T
Q  134 ctcttttatattggatggccattag-ggtttccattattccgttaatgggccatccggacatccactcat 202  Q
    ||||||||||||| || |||||||| | |||||||||||||||| ||| | |||||  |||| |||||||    
T  28765410 ctcttttatattgaatcgccattagagttttccattattccgttgatgagtcatccatacattcactcat 28765341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 23284784 - 23284680
Alignment:
Q  123 gggaccatagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactc--attgagtccatatcaacta 219  Q
    ||||||||| | ||||||||||| |||||||||||| ||||| |||||||||||||||||| |||| | |||||||| |  |||||||| ||||| | ||    
T  23284784 gggaccataacatcttttatatttgatggccattagagtttcacattattccgttaatgggtcatcagaacatccacccatattgagtcaatatccatta 23284685  T
Q  220 attaa 224  Q
    |||||    
T  23284684 attaa 23284680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: scaffold0208
Description:

Target: scaffold0208; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 6462 - 6246
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6462 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 6363  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  6362 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 6263  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  6262 aattaaataattaatta 6246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0208; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 12335 - 12119
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  12335 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgccgtgtacggtgtatt 12236  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  12235 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 12136  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  12135 aattaaataattaatta 12119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 28525609 - 28525825
Alignment:
Q  25 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggg 124  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||    
T  28525609 agcggtggctgatttgattcttcctcaaccggtacctttatgcctcacgttctcttcagatggggagaagagagagt-ttgccatgtacggtatattggg 28525707  T
Q  125 gaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaatta 223  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28525708 gaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaatta 28525807  T
Q  224 aatatttaattaattatc 241  Q
    ||||||||||||||||||    
T  28525808 aatatttaattaattatc 28525825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 241
Target Start/End: Complemental strand, 41297222 - 41296999
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagt---tctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||| |    
T  41297222 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagtagttctcttcagatggggagaagagagagtattgtcgtgtacggtgt 41297123  T
Q  119 attggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaac 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||     
T  41297122 attggggaccatagcctcttttatattggatgaccattagggtttcccattattctgttaatgggtcatccggacatccactcattgagtccatatcaat 41297023  T
Q  218 taattaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||||    
T  41297022 taattaaatatttaattaattatc 41296999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 7389767 - 7389987
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||    
T  7389767 gttagcggcgactgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagttttgccgtgtacagtatatt 7389866  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||    
T  7389867 gggaaccatagcctcttttatattggatggccattagagtttcccattattccgttaatgggtcatccgaacatccactcattaagtccatatcaactaa 7389966  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  7389967 ttaaatatttaattaattatc 7389987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 12686399 - 12686614
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  12686399 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtgtatt 12686497  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  12686498 ggggaccatagcctcttttatatttgatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 12686597  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  12686598 aattaaataattaatta 12686614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 12692501 - 12692716
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||    
T  12692501 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtgtatt 12692599  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  12692600 ggggaccatagcctcttttatatttgatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 12692699  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  12692700 aattaaataattaatta 12692716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 28531705 - 28531921
Alignment:
Q  25 agcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggg 124  Q
    ||||| |||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||     
T  28531705 agcggtggctgatttgattcttcctcaaccagtacctttatgcctcacgttctcttcagatggggagaagagagagt-ttgccatgtacggtatattgga 28531803  T
Q  125 gaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaactaatta 223  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28531804 gaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaatta 28531903  T
Q  224 aatatttaattaattatc 241  Q
    ||||||||||||||||||    
T  28531904 aatatttaattaattatc 28531921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 32094441 - 32094657
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32094441 gttagcggcggctaatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtgtatt 32094540  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
     ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  32094541 tgggaccatagcctcttttatattagatggccattagggtttcccattattccgttaatgggccatccggacatacactcatgttgagtccatatcaact 32094640  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  32094641 aattaaataattaatta 32094657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 32097242 - 32097458
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||| ||||    
T  32097242 gttagcggcggctgatttagttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaatagagagtatttccgtgtacggtgtatt 32097341  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactca--ttgagtccatatcaact 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  32097342 ggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggccatccggacatccactcatgttgagtccatatcaact 32097441  T
Q  219 aattaaatatttaatta 235  Q
    ||||||||| |||||||    
T  32097442 aattaaataattaatta 32097458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 20500079 - 20499858
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||||| ||||||| ||| |||||||||| |||    
T  20500079 ggttagcagcggttgatttggttcttccttaaccggtacatttatgcctcaagttctcttcaaatggagagaacagagagttttgccgtgtacggtgtat 20499980  T
Q  121 tggggaccatagcctcttttatattggatggccattaggg-tttccattattccgttaatgggccatccggacatccactcattgagtccatatcaacta 219  Q
    |||||||||||||||||| | ||||||||| ||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    
T  20499979 tggggaccatagcctcttatttattggatgaccattagggttttccattatttcgttaatgggccatccagacatccactcattgagtccatatcaatta 20499880  T
Q  220 attaaatatttaattaattatc 241  Q
    ||||||||||||||||||||||    
T  20499879 attaaatatttaattaattatc 20499858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 14610109 - 14609909
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| ||| ||||| |||| |||    
T  14610109 ggttagcggcggctgatttggttcttcctcaaccggtacttttatgcctaaagttctcttcagatggggagaaaagaaagt-ttgccgtgttcggtgtat 14610011  T
Q  121 tggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||| ||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  14610010 tggggaccataacctcttttacattagatgaccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaattaa 14609911  T
Q  221 tt 222  Q
    ||    
T  14609910 tt 14609909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 19059988 - 19060208
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||| |||||||||  | | |    
T  19059988 acggttagcggcggctgatttggttcttcctcaactggtacttttatgcctcaagttctcttcatatcgggagaagagagagt-ttgtcgtgtctgatgt 19060086  T
Q  119 attggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactc--attgagtccatatca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||  ||||||||||||||     
T  19060087 attggggaccatagcctcttttatattggatggccattagggtttcccattattccgttaatgggacatccagacatccactcatattgagtccatatcc 19060186  T
Q  216 actaattaaatatttaattaat 237  Q
    | ||||||| || |||||||||    
T  19060187 attaattaattaattaattaat 19060208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 241
Target Start/End: Complemental strand, 30772222 - 30772000
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | |||||    
T  30772222 ggttagcggcggctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtctgatatat 30772124  T
Q  121 tggggaccatagcctcttttatattggatggccattaggg-tttccattattccgttaatgggccatccggacatccactc--attgagtccatatcaac 217  Q
    || ||||||||| ||||| |||||||||||  ||| |||| ||| |||||||| ||||||||| ||||| |||||||||||  |||||||||||||||||    
T  30772123 tgtggaccatagtctcttctatattggatgatcatcagggtttttcattattctgttaatgggtcatccagacatccactcatattgagtccatatcaac 30772024  T
Q  218 taattaaatatttaattaattatc 241  Q
    ||||||| ||||||||||||||||    
T  30772023 taattaattatttaattaattatc 30772000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 30384607 - 30384823
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattg 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||  || ||| |||||||||| |||||    
T  30384607 ttagcggcgactgatttggttcttcctcaaccggtacctttatacctcgagttctcttcagatggggagaagagaatgt-ttgccgtgtacggtgtattg 30384705  T
Q  123 gggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaatt 222  Q
    || ||||||| ||||||||||||||||| | |||||  |||||||||||||||||||| | ||||| |||||||||||||||| |||||||| | ||||     
T  30384706 gg-accatagtctcttttatattggatgactattagattttccattattccgttaatgagtcatccagacatccactcattgaatccatatctattaatg 30384804  T
Q  223 aaatatttaattaattatc 241  Q
    |||||||||||||||||||    
T  30384805 aaatatttaattaattatc 30384823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 19066329 - 19066512
Alignment:
Q  19 acggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtat 118  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |    
T  19066329 acggttagcggcagctgatttgattcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgtcgtgtccggtgt 19066427  T
Q  119 attggggaccatagcctcttttatattggatggccattaggg-tttccattattccgttaatgggccatccggacatccactcat 202  Q
    ||||||||||| | ||| ||||||||||||||| |||||||| ||||||||||| |||||||||| ||||| |||||||||||||    
T  19066428 attggggaccacaacctattttatattggatggtcattagggttttccattatttcgttaatgggtcatccagacatccactcat 19066512  T

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Target: chr5; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 26318479 - 26318677
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatat 120  Q
    ||||||||||   ||||||||||||| |||||||||||| ||||| ||  ||||||||||||||| ||||||||||||||| ||||||| | || |||||    
T  26318479 ggttagcggcaattgatttggttctttctcaaccggtacatttataccataagttctcttcagat-gggagaagagagagt-ttgtcgtttccgatatat 26318576  T
Q  121 tggggaccatagcctcttttatattg-gatggccattaggg--tttccattattccgttaatgggccatccggacatccactc--attgagtccatatca 215  Q
    |||||| ||||||||||| |||| || |||| |||||||||  ||| ||||||| | ||||||| |||||  ||||| |||||  |||||||||||||||    
T  26318577 tggggatcatagcctcttatatagtgtgatgaccattagggttttttcattatttcattaatggaccatctagacattcactcaaattgagtccatatca 26318676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 216
Target Start/End: Complemental strand, 26509781 - 26509595
Alignment:
Q  28 ggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggac 127  Q
    ||||||||||||| | ||||||||| ||||||||||||||||| ||||||| ||||||||  | ||| |||||| ||  |||||||||||||| | ||||    
T  26509781 ggcggctgatttgatacttcctcaatcggtacctttatgcctctagttctcatcagatgg--aaaagggagagt-ttaccgtgtacggtatatcgtggac 26509685  T
Q  128 catagcctcttttatattggatggccattagggtttc-cattattccgttaatgggccatccggacatccactcattgagtccatatcaa 216  Q
    |||| |||||| ||   ||  | |||||||  ||||| || ||||||||| |||| ||||||  |||||||||||| |||| ||||||||    
T  26509684 cataacctcttatagtgtgatttgccattaaagtttctcaatattccgttgatggaccatccaaacatccactcatagagttcatatcaa 26509595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 33753476 - 33753612
Alignment:
Q  43 tcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttat 142  Q
    |||| ||||| |||||  |||||||||||||||||| |  ||||||||||||||||||||| || ||||||||| || || ||| ||||| ||||||||     
T  33753476 tctttctcaaacggtatttttatgcctcaagttctccttggatggggagaagagagagtatggt-gtgtacggtgtactgaggaacataggctctttta- 33753573  T
Q  143 attggatggccattagggttt-ccattattccgttaatg 180  Q
    ||  ||||| ||||||||||| |||||||||||||||||    
T  33753574 atatgatggtcattagggtttcccattattccgttaatg 33753612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 8706746 - 8706826
Alignment:
Q  161 tttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||| |||| | | ||||||| ||||  |||||||||| |||||||||||||||| |||||||    
T  8706746 tttccattattccgttaatgggtcatctgcatatccacttattggatccatatcaattaattaaatatttaataaattatc 8706826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 176
Target Start/End: Original strand, 33849110 - 33849242
Alignment:
Q  43 tcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttat 142  Q
    |||| ||||| |||||  |||||||||||||||||| |  ||||||||||||||||||||| || |||||| || || || ||| ||||| ||||||||     
T  33849110 tctttctcaaacggtatttttatgcctcaagttctccttggatggggagaagagagagtatggt-gtgtacagtgtactgaggaacataggctctttta- 33849207  T
Q  143 attggatggccattagggttt-ccattattccgtt 176  Q
    ||  ||| | ||||||||||| |||||||||||||    
T  33849208 atatgatagtcattagggtttcccattattccgtt 33849242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 55
Target Start/End: Original strand, 8706638 - 8706672
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccg 55  Q
    |||||||| ||||||||||||||||||||||||||    
T  8706638 ggttagcgacggctgatttggttcttcctcaaccg 8706672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 241
Target Start/End: Complemental strand, 14609888 - 14609851
Alignment:
Q  204 gagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  14609888 gagtccatatcaattaattaaatgtttaattaattatc 14609851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 173110 - 173329
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||| ||||    
T  173110 gttagcggcggctgatttggttcttcctcaaccagtacctttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtatacggtgtatt 173208  T
Q  122 ggggaccatagcctcttttatattggatggccattagggttt-ccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  173209 ggggaccatagcctcttttatattggatgaccattagggtttcccattattccgttaatagaacatccggacatccactcattgagtccatatcaactaa 173308  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  173309 ttaaatatttaattaattatc 173329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 22 - 241
Target Start/End: Original strand, 1414 - 1627
Alignment:
Q  22 gttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatatt 121  Q
    |||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||  ||||| | ||||||    
T  1414 gttagcggcgactgatttggtttttcctcaaccggtacatttatgcctcaagttctcttcagatggggagaagagagagt-ttgcggtgtatgatatatt 1512  T
Q  122 ggggaccatagcctcttttatattggatggccattagg-gtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaa 220  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||      ||| |||||||||||||||||||||||||||||||||||||    
T  1513 ggggaccatagcctcttttatattggatggccattaggattttccattattcc------gggtcatccggacatccactcattgagtccatatcaactaa 1606  T
Q  221 ttaaatatttaattaattatc 241  Q
    |||||||||||||||||||||    
T  1607 ttaaatatttaattaattatc 1627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 241
Target Start/End: Original strand, 840 - 1038
Alignment:
Q  23 ttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattg 122  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||    
T  840 ttagcggcggctgatttggttcttcctcaaccggtacgtttatgcctcaagttctcttcagatggggagaagagagagt-ttgccgtgtacggtgtattg 938  T
Q  123 gggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactcattgagtccatatcaactaatt 222  Q
    ||||||||||||||||||                    || |||||||| |||||||||| |||||| |||||||||||||||| |||||||||||||||    
T  939 gggaccatagcctctttt-------------------tttcccattatttcgttaatgggacatccgaacatccactcattgagcccatatcaactaatt 1019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 75 - 241
Target Start/End: Complemental strand, 949 - 783
Alignment:
Q  75 tctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctcttttatattggatggccattagggttt-ccattattcc 173  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||     
T  949 tctcttcagatggggagaagagagagt-ttgtcgtgtacagtgtattggggaccatagcctcttttatattggatgaccattagggtttcccattattct 851  T
Q  174 gttaatgggccatccggacatccactcattgagtccatatcaactaattaaatatttaattaattatc 241  Q
    ||||||||| ||||  ||||| |||||||||||| |||||||  |||||||||||||||| |||||||    
T  850 gttaatgggtcatctagacattcactcattgagtacatatcagttaattaaatatttaatcaattatc 783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 1024 - 950
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaaga 95  Q
    |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  1024 ggttagtggcggctgatttggttcttcctcaaccgttatctttatgcctcaagttctcttcagatggggagaaga 950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 118 - 241
Target Start/End: Complemental strand, 14117 - 13993
Alignment:
Q  118 tattggggaccatagcctcttttatattggatggccattagggtttcc-attattccgttaatgggccatccggacatccactcattgagtccatatcaa 216  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||    
T  14117 tattggggaccataacctcttttatattggatgaccattagggtttcccattattccgttaatgggtcatccggacatccactcattgaatccatatcaa 14018  T
Q  217 ctaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||||    
T  14017 ctaattaaatatttaattaattatc 13993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 109 - 241
Target Start/End: Complemental strand, 5821 - 5687
Alignment:
Q  109 tgtacggtatattggggaccatagcctcttttatattggatggccattagggtttccattattccgttaatgggccatccggacatccactc--attgag 206  Q
    |||||| | ||||||| ||||||||||||||||||||| |||||| ||||| || ||||||||| ||||||||| |||||| ||||||||||  ||||||    
T  5821 tgtacgatgtattgggaaccatagcctcttttatattgaatggccgttaggtttcccattattctgttaatgggtcatccgaacatccactcatattgag 5722  T
Q  207 tccatatcaactaattaaatatttaattaattatc 241  Q
    |||||||||||||||||||||||||||||||||||    
T  5721 tccatatcaactaattaaatatttaattaattatc 5687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 5885 - 5826
Alignment:
Q  21 ggttagcggcggctgatttggttcttcctcaaccggtacctttatgcctcaagttctctt 80  Q
    |||||||| || || |||||||||||||||||||||||| ||||||||||||||| ||||    
T  5885 ggttagcgacgactaatttggttcttcctcaaccggtacatttatgcctcaagttatctt 5826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 38347 - 38152
Alignment:
Q  41 gttcttcctcaaccggtacctttatgcctcaagttctcttcagatggggagaagagagagtattgtcgtgtacggtatattggggaccatagcctctttt 140  Q
    ||||||||||||| | |||||||||| ||||||||||||||||||||| |||| |||| ||||| || |||||||| |||||| ||||||| ||||||      
T  38347 gttcttcctcaactgatacctttatgtctcaagttctcttcagatgggaagaatagagtgtattatcatgtacggtgtattggagaccataacctctt-- 38250  T
Q  141 atattg-gatggccattagggtttcc-attattccgttaatgggccatccggacatccactc-attgagtccatatcaactaattaaatatttaatta 235  Q
    ||| || ||||  ||||||||||| | |||||||||||||| || ||||  |||||||||   ||| |||||||||||| |||||||||| |||||||    
T  38249 atagtgtgatgatcattagggttttctattattccgttaatcggtcatctagacatccaccatattaagtccatatcaattaattaaataattaatta 38152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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