View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3006_high_2 (Length: 565)
Name: NF3006_high_2
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 13 - 546
Target Start/End: Original strand, 3788921 - 3789454
Alignment:
| Q |
13 |
aaaagagacaccactaattgtttttccttcatcatacatgaatatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3788921 |
aaaagagacaccactaattgtttttccttcatcatacatgaatatttaacaccactaattcaaaacaacaagaaataatagattataaaaacattaataa |
3789020 |
T |
|
| Q |
113 |
ttcgcccaagtaataaacttttggagattatgtgatgactggccaccttcttctatattcttaatagtcattttcttcattttcaaacacattgccttta |
212 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3789021 |
ttcgcccaactaataaacttttgaagattatgtgatgactggccaccttcttctatattagtaatagtcattttcttcattttcaaacacatttccttta |
3789120 |
T |
|
| Q |
213 |
tatcatcatcaccaactacttgatccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacac |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789121 |
tgtcatcatcaccaactacttgatccaccttcttctttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacac |
3789220 |
T |
|
| Q |
313 |
atcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatcca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789221 |
atcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatcca |
3789320 |
T |
|
| Q |
413 |
cagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggt |
512 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3789321 |
cagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggt |
3789420 |
T |
|
| Q |
513 |
atgtatagtttaccttattgtcattactaggacg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
3789421 |
atgtatagtttaccttattgtcattactaggacg |
3789454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 60 - 546
Target Start/End: Complemental strand, 3801136 - 3800653
Alignment:
| Q |
60 |
aacaccactaattcaaaacaacaagaaataatagattataaaaacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
159 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3801136 |
aacaacactaattcaaaacaacaag---taatagattataaacacattaataattcgcccaagtaataaacttttggagattatgtgatgactggccacc |
3801040 |
T |
|
| Q |
160 |
ttcttctatattcttaatagtcattttcttcattttcaaacacattgcctttatatcatcatcaccaactacttgatccaccttcttatttatctcttgc |
259 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||| | |
|
|
| T |
3801039 |
ttcttctatattagtaatagtcattttcttcattttcaaacacattgcctttatgtcatcatcaccaactacttgatacaccttcttctttatctctttc |
3800940 |
T |
|
| Q |
260 |
cttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggcc |
359 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3800939 |
cttgatatataaccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcaactgaaaatggcc |
3800840 |
T |
|
| Q |
360 |
aacacaagaaaggtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttact |
459 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
3800839 |
aacacaagaaaggtacaccagcatgtacaccttctatggtagaattccatccacaatgacttataaagcaagcaatggctggatgattcaatattttact |
3800740 |
T |
|
| Q |
460 |
ttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacg |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3800739 |
ttgtggtgcccaaccaacaattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacg |
3800653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 278 - 546
Target Start/End: Original strand, 3767850 - 3768118
Alignment:
| Q |
278 |
tcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaaggtacac |
377 |
Q |
| |
|
||||| || |||||||||| |||| ||||||||||||||||||||| || || || ||||||||||||| |||||||||||| |||||||||| || |
|
|
| T |
3767850 |
tcatccttgtctaattcaaatccaaccttccacacatcacaaatatatgacttgttcgtaaattgatcagttgcaaatggccaacataagaaaggtatac |
3767949 |
T |
|
| Q |
378 |
cggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgcccaaccaac |
477 |
Q |
| |
|
| | || ||||||||| || || |||||||| ||||| ||||| ||||| ||||| || || |||||||||||||| || | || ||| |||||| ||| |
|
|
| T |
3767950 |
cagaatatacaccttctatagtagaattccaaccacaatgactaatgaaacaagctatagcaggatggttcaatatcttcttctgcggtacccaactaac |
3768049 |
T |
|
| Q |
478 |
aattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacg |
546 |
Q |
| |
|
|| || |||||| |||| |||| |||| |||||||| |||||||||||| ||||||||||||||||| |
|
|
| T |
3768050 |
gatctttcctttagttccgaggaattcatcagggtatgcatagtttaccttgttgtcattactaggacg |
3768118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 272 - 546
Target Start/End: Original strand, 3780122 - 3780396
Alignment:
| Q |
272 |
ccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattgagaaattgatcagttaaaaatggccaacacaagaaag |
371 |
Q |
| |
|
||||| ||||| || |||| |||||||||| ||||||||||||||||| ||| || || || | |||||||||| ||| |||||||||||||||| |
|
|
| T |
3780122 |
ccatcttcatccttgtctagttcaagtccaaccttccacacatcacaaacatatgacttgttcataaattgatcaccgtgaaacggccaacacaagaaag |
3780221 |
T |
|
| Q |
372 |
gtacaccggcatgtacaccttcaatggtggaattccatccacagtgacttatgaagcaagcaatggctggatggttcaatattttactttgtggtgccca |
471 |
Q |
| |
|
|||||||| || ||||||||| | ||| ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| || |||| || ||||| |
|
|
| T |
3780222 |
gtacaccgctatatacaccttctacggtagaattccatccgcaatgactaatgaaacaagcaatagcagggtggttcaatatcttcttttgcggcgccca |
3780321 |
T |
|
| Q |
472 |
accaacaattttacctttacttccatggaagtcattagggtatgtatagtttaccttattgtcattactaggacg |
546 |
Q |
| |
|
|||||||| || |||||| ||||| | || |||| |||||||| ||||||||||||||| ||||| || ||||| |
|
|
| T |
3780322 |
tccaacaatctttcctttagttccaagaaattcatcagggtatgcatagtttaccttattatcattgctcggacg |
3780396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 235 - 375
Target Start/End: Original strand, 3755159 - 3755299
Alignment:
| Q |
235 |
atccaccttcttatttatctcttgccttgatataaatccatcatcatctttctctaattcaagtccagtcttccacacatcacaaatatacgatttattg |
334 |
Q |
| |
|
|||||||||||| ||||||||| | ||| ||| ||||||| ||||| || || ||| | | |||| |||||| |||||||||||||| | || || |
|
|
| T |
3755159 |
atccaccttcttctttatctctccctttgttattaatccattttcatccttttcaaatcccaatccaaccttccaaacatcacaaatatatgtcttgttc |
3755258 |
T |
|
| Q |
335 |
agaaattgatcagttaaaaatggccaacacaagaaaggtac |
375 |
Q |
| |
|
| || ||||||| | ||||||||| ||||||| |||||||| |
|
|
| T |
3755259 |
ataagttgatcactaaaaaatggcaaacacaacaaaggtac |
3755299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University