View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_high_20 (Length: 240)
Name: NF3006_high_20
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36478729 - 36478506
Alignment:
| Q |
1 |
cctttacaatctaacaaagctattctctccttaatagcataaatcctccctgacaaattttgaacatgattactattccatagtttaagccccgatttga |
100 |
Q |
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| T |
36478729 |
cctttacaatctaacaaagctattctctccttaatagcagaaatcctccctgacaaattttgaacatgattattattctatagtttaagcgccgatttga |
36478630 |
T |
|
| Q |
101 |
tcaacttaaacttctccttaagcacgtaaccacccaaaccatcaacctgaaaagacctccactgatcacaaacaaactacttagtacttggaatctcgaa |
200 |
Q |
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| T |
36478629 |
tcaacttaaacttctccttaagcacgtaaccacccaaaccatcaacctgaaaagacctccactgatcacaaacaaactacttagtacttggaatctctaa |
36478530 |
T |
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| Q |
201 |
ccaacacttcagcatatgcggttg |
224 |
Q |
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| T |
36478529 |
ccaacacttcaacatatgcggttg |
36478506 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 176
Target Start/End: Complemental strand, 41351058 - 41350937
Alignment:
| Q |
55 |
aaattttgaacatgattactattccatagtttaagccccgatttgatcaacttaaacttctccttaagcacgtaaccacccaaaccatcaacctgaaaag |
154 |
Q |
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| T |
41351058 |
aaattttgaacatgcttactatgccataaattaagagtcaatttaatcagtttaaacttctccttggccacatacccaccccatccttcaacctgaaaag |
41350959 |
T |
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| Q |
155 |
acctccactgatcacaaacaaa |
176 |
Q |
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| T |
41350958 |
atcttcactaatcacacacaaa |
41350937 |
T |
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