View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_high_21 (Length: 239)
Name: NF3006_high_21
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 6215519 - 6215284
Alignment:
| Q |
15 |
attttggcatgcaaaaatagaccatctttcattgacagttgaatatttacagcatttgccctatagatcacattttctaagataatatatacatgctcaa |
114 |
Q |
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| T |
6215519 |
attttggcatgcaaaaatagaccatctttcattgacagttgaatatttacacctttttccctatagatcacattttctaagataatatacacatgctcaa |
6215420 |
T |
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| Q |
115 |
cagcaatgaaactacaaattatatcaaat----------tatgtatgtatgttttctactagtaaattgggaacttttaactcatatattgttctttgaa |
204 |
Q |
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| T |
6215419 |
caacaatgaaactacaaattatatcaaattatatgtatgtatgtatgtatgttttctactagtaaattgggaacttttaactcatatattgttctttgaa |
6215320 |
T |
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| Q |
205 |
tagtttc-ttttcaagagaaatgatatttatacaac |
239 |
Q |
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||||||| |||| ||||||||||||||||||||||| |
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| T |
6215319 |
tagtttcttttttaagagaaatgatatttatacaac |
6215284 |
T |
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