View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_high_4 (Length: 479)

Name: NF3006_high_4
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_high_4
NF3006_high_4
[»] chr4 (7 HSPs)
chr4 (169-466)||(4908321-4908617)
chr4 (30-107)||(4908247-4908324)
chr4 (253-384)||(4902559-4902688)
chr4 (254-345)||(4916347-4916434)
chr4 (284-365)||(4896572-4896647)
chr4 (315-418)||(4938075-4938179)
chr4 (349-418)||(4984800-4984869)
[»] chr6 (3 HSPs)
chr6 (283-413)||(22009481-22009611)
chr6 (254-396)||(22055396-22055544)
chr6 (254-396)||(22020899-22021050)
[»] chr2 (3 HSPs)
chr2 (283-413)||(44309763-44309893)
chr2 (254-396)||(44365781-44365929)
chr2 (254-396)||(44331007-44331158)


Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 169 - 466
Target Start/End: Original strand, 4908321 - 4908617
Alignment:
Q  169 tccaacgaatattgtacacaactaaatccttaccactactacacgaaagattatccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 268  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4908321 tccaacgaatattgtacacaactaaattcttaccactactacacgaaagattctccaaataaaattgtacacgaaaaatatttcaaaaaactatttgttc 4908420  T
Q  269 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttga 368  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4908421 tcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaataacaacttgttcactaaattccctttga 4908520  T
Q  369 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgtgnnnnnnnnngtcatcgtttgtattagttttaaaaatatattggctct 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          |||||| |||||||||||||||||||||||||||||||    
T  4908521 gaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt-tttttttttgtcatcctttgtattagttttaaaaatatattggctct 4908617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 4908247 - 4908324
Alignment:
Q  30 gaagaagccgaatggtataagttatttaaaccaacaattcaatcgtaacgaacacaggatatgcaagaagtgtatcca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4908247 gaagaagccgaatggtataagttatttaaaccaacaattcaatcgtaacgaacacagggtatgcaagaagtgtatcca 4908324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 253 - 384
Target Start/End: Original strand, 4902559 - 4902688
Alignment:
Q  253 aaaaaactatttgttctcaataatgattgctttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacct---caacaacaacttg 349  Q
    |||||||||||||||||||||||||| | |||||||||||| ||||||||||||     || ||||||||||||||||||||||   |||||||||||||    
T  4902559 aaaaaactatttgttctcaataatgacttctttatataatgttgaaacttacca-----ctactcttgtactcactttgaacctcaacaacaacaacttg 4902653  T
Q  350 ttcactaaattccctttgagaattgttcttccaaa 384  Q
    |||| ||||||||||| || ||||| |||||||||    
T  4902654 ttcaataaattcccttcgaaaattgctcttccaaa 4902688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 254 - 345
Target Start/End: Original strand, 4916347 - 4916434
Alignment:
Q  254 aaaaactatttgttctcaataatgattgctttatataat-gctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa 345  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||     || || |||||| ||||||||||||||||||||||||    
T  4916347 aaaaactatttgttctcaataatgattgctttatataatggctgaaactta-----tcactactcttgcactcactttgaacctcaacaacaa 4916434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 284 - 365
Target Start/End: Original strand, 4896572 - 4896647
Alignment:
Q  284 ttatataatgctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctt 365  Q
    |||||||||||||||||||||||     || |||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  4896572 ttatataatgctgaaacttacca-----ctactcttgtactcactttgaaccttaacaacaa-ttgttcactaaattccctt 4896647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 315 - 418
Target Start/End: Original strand, 4938075 - 4938179
Alignment:
Q  315 ctcttgtactcactttgaacctcaacaacaacttgttcac--taaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatt 412  Q
    ||||||| |||||||||||||||||||||||  | ||| |  |||||| |||| ||||||||||||| | |||||||||||||||||| |   |||||||    
T  4938075 ctcttgtcctcactttgaacctcaacaacaaactcttcgctataaatttccttcgagaattgttctt-ctaacaatgagtgcttctcacaaataataatt 4938173  T
Q  413 tgttgt 418  Q
    ||||||    
T  4938174 tgttgt 4938179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 418
Target Start/End: Original strand, 4984800 - 4984869
Alignment:
Q  349 gttcactaaattccctttgagaattgttcttccaaacaatgagtgcttctcatagtgaataatttgttgt 418  Q
    |||||||||| ||||||| |||| |||||||||||||||| |||| || ||| |  ||||| ||||||||    
T  4984800 gttcactaaactccctttaagaaatgttcttccaaacaataagtgtttatcacaaagaatattttgttgt 4984869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 413
Target Start/End: Original strand, 22009481 - 22009611
Alignment:
Q  283 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 381  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  22009481 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 22009580  T
Q  382 aaacaatgagtgcttctcatagtgaataattt 413  Q
     ||||| ||||||||||||||  |||||||||    
T  22009581 -aacaacgagtgcttctcataaagaataattt 22009611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 396
Target Start/End: Original strand, 22055396 - 22055544
Alignment:
Q  254 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 346  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22055396 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22055495  T
Q  347 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 396  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22055496 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22055544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 396
Target Start/End: Original strand, 22020899 - 22021050
Alignment:
Q  254 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 345  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  22020899 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 22020998  T
Q  346 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 396  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  22020999 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 22021050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 283 - 413
Target Start/End: Original strand, 44309763 - 44309893
Alignment:
Q  283 tttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaacttgttcactaaattccctttgagaattgttcttcc 381  Q
    ||||||||||| ||||||||||||||| |||  ||||||||||||  ||||| |||||||||||  | ||||||||||||||||||||  ||||||||||    
T  44309763 tttatataatggctgaaacttaccactcctcacctcttgtactcatattgaatctcaacaacaaactcttcactaaattccctttgagtgttgttcttcc 44309862  T
Q  382 aaacaatgagtgcttctcatagtgaataattt 413  Q
     ||||| ||||||||||||||  |||||||||    
T  44309863 -aacaacgagtgcttctcataaagaataattt 44309893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 254 - 396
Target Start/End: Original strand, 44365781 - 44365929
Alignment:
Q  254 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaac 346  Q
    ||||||||||||||||||||| ||||      |||||||||||||| ||||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44365781 aaaaactatttgttctcaatattgatattgattgctttatataatggctgaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44365880  T
Q  347 ttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 396  Q
     | ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44365881 ctcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44365929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 254 - 396
Target Start/End: Original strand, 44331007 - 44331158
Alignment:
Q  254 aaaaactatttgttctcaataatgat------tgctttatataatg-ctgaaacttaccacttctcttctcttgtactcactttgaacctcaacaacaa- 345  Q
    ||||||||||||||||||||| ||||      |||||||||||||| | ||||||||||||| |||  ||||||||||||| ||||| |||||||||||     
T  44331007 aaaaactatttgttctcaatattgatattgattgctttatataatggcagaaacttaccactcctcacctcttgtactcacattgaatctcaacaacaaa 44331106  T
Q  346 --cttgttcactaaattccctttgagaattgttcttccaaacaatgagtgctt 396  Q
      ||| ||||||||| |||||||  |  |||||||||| ||||| ||||||||    
T  44331107 ctcttcttcactaaactccctttttgtgttgttcttcc-aacaacgagtgctt 44331158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University