View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_low_1 (Length: 572)

Name: NF3006_low_1
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_low_1
NF3006_low_1
[»] chr6 (28 HSPs)
chr6 (1-497)||(17770497-17770993)
chr6 (1-249)||(1575690-1575925)
chr6 (3-187)||(696442-696627)
chr6 (76-167)||(696622-696714)
chr6 (76-156)||(1575927-1576007)
chr6 (96-156)||(31624122-31624182)
chr6 (76-167)||(23271999-23272088)
chr6 (98-146)||(769180-769228)
chr6 (112-155)||(6647420-6647463)
chr6 (106-149)||(34403894-34403937)
chr6 (97-155)||(10616692-10616750)
chr6 (97-155)||(20368159-20368217)
chr6 (96-149)||(3738108-3738161)
chr6 (105-149)||(4080955-4080999)
chr6 (105-149)||(5566164-5566208)
chr6 (3-55)||(23272083-23272135)
chr6 (105-149)||(33887869-33887913)
chr6 (96-131)||(26709793-26709828)
chr6 (97-155)||(2263225-2263283)
chr6 (108-154)||(4246444-4246490)
chr6 (166-224)||(8331699-8331757)
chr6 (105-155)||(28641736-28641786)
chr6 (96-149)||(7931704-7931757)
chr6 (97-150)||(8035127-8035180)
chr6 (108-149)||(9667975-9668016)
chr6 (97-150)||(33832252-33832305)
chr6 (105-149)||(2027393-2027437)
chr6 (105-149)||(22743520-22743564)
[»] chr7 (17 HSPs)
chr7 (1-249)||(15740451-15740686)
chr7 (3-187)||(43219689-43219874)
chr7 (3-139)||(11047916-11048052)
chr7 (76-167)||(43219602-43219694)
chr7 (76-167)||(11048047-11048139)
chr7 (76-156)||(15740369-15740449)
chr7 (97-155)||(19719039-19719097)
chr7 (97-150)||(39967958-39968012)
chr7 (101-149)||(20888377-20888425)
chr7 (96-150)||(34035955-34036010)
chr7 (96-150)||(9038150-9038203)
chr7 (107-149)||(25511665-25511707)
chr7 (108-149)||(36598346-36598387)
chr7 (100-141)||(43250681-43250722)
chr7 (108-148)||(6857329-6857369)
chr7 (105-149)||(22551392-22551436)
chr7 (107-155)||(25596066-25596114)
[»] chr3 (37 HSPs)
chr3 (90-327)||(5396075-5396295)
chr3 (264-415)||(5391726-5391869)
chr3 (3-139)||(39723285-39723421)
chr3 (76-167)||(39723198-39723290)
chr3 (90-155)||(5391912-5391977)
chr3 (105-150)||(53762381-53762426)
chr3 (96-141)||(45541618-45541663)
chr3 (108-155)||(3044249-3044296)
chr3 (96-155)||(34954115-34954173)
chr3 (96-155)||(39602188-39602247)
chr3 (96-155)||(54837012-54837071)
chr3 (101-155)||(52440645-52440699)
chr3 (114-155)||(25925775-25925816)
chr3 (106-155)||(36101601-36101650)
chr3 (106-155)||(36139911-36139960)
chr3 (97-149)||(29427624-29427676)
chr3 (107-150)||(5166361-5166404)
chr3 (97-155)||(21367700-21367759)
chr3 (105-155)||(2152165-2152215)
chr3 (105-155)||(3015830-3015880)
chr3 (97-150)||(26878238-26878292)
chr3 (97-147)||(34707475-34707525)
chr3 (117-155)||(40665462-40665500)
chr3 (97-155)||(53952081-53952139)
chr3 (97-155)||(54180759-54180817)
chr3 (109-150)||(13804815-13804856)
chr3 (108-149)||(20192596-20192637)
chr3 (105-150)||(21754755-21754800)
chr3 (96-152)||(23816254-23816311)
chr3 (96-149)||(27290879-27290932)
chr3 (108-149)||(37273173-37273214)
chr3 (108-149)||(42745077-42745118)
chr3 (99-155)||(23808045-23808101)
chr3 (96-148)||(24624250-24624302)
chr3 (97-155)||(36769950-36770005)
chr3 (105-149)||(38971297-38971341)
chr3 (97-149)||(49465644-49465696)
[»] chr8 (28 HSPs)
chr8 (381-450)||(41066752-41066821)
chr8 (316-375)||(41066667-41066729)
chr8 (96-154)||(3254259-3254317)
chr8 (96-150)||(779039-779093)
chr8 (97-150)||(1930073-1930127)
chr8 (97-155)||(8629489-8629547)
chr8 (108-149)||(9835890-9835931)
chr8 (99-155)||(3161604-3161660)
chr8 (99-155)||(12851209-12851265)
chr8 (105-149)||(42215293-42215337)
chr8 (98-149)||(10383924-10383975)
chr8 (96-155)||(11770989-11771048)
chr8 (106-149)||(41606891-41606934)
chr8 (108-150)||(11569447-11569489)
chr8 (97-155)||(13459678-13459736)
chr8 (113-155)||(20672783-20672825)
chr8 (105-155)||(30389132-30389182)
chr8 (107-148)||(2594986-2595027)
chr8 (114-155)||(11118993-11119034)
chr8 (108-149)||(11185260-11185301)
chr8 (112-149)||(12361231-12361268)
chr8 (105-150)||(43368687-43368732)
chr8 (97-141)||(2458545-2458589)
chr8 (115-155)||(3600735-3600775)
chr8 (123-155)||(6525625-6525657)
chr8 (105-149)||(7918433-7918477)
chr8 (115-155)||(14339602-14339642)
chr8 (105-157)||(14949897-14949949)
[»] chr1 (39 HSPs)
chr1 (97-155)||(10744334-10744392)
chr1 (98-149)||(35925729-35925780)
chr1 (97-149)||(37811891-37811943)
chr1 (97-153)||(4549883-4549939)
chr1 (107-155)||(6292526-6292574)
chr1 (105-155)||(10199395-10199445)
chr1 (97-155)||(37842334-37842392)
chr1 (105-150)||(38170677-38170722)
chr1 (76-149)||(6262059-6262128)
chr1 (106-150)||(10854771-10854815)
chr1 (97-141)||(38001643-38001687)
chr1 (100-155)||(4699597-4699652)
chr1 (96-155)||(11639394-11639453)
chr1 (108-155)||(11695894-11695941)
chr1 (108-155)||(28689442-28689489)
chr1 (108-155)||(30815643-30815690)
chr1 (114-149)||(47917275-47917310)
chr1 (96-150)||(1565513-1565567)
chr1 (101-155)||(7218057-7218111)
chr1 (107-149)||(7262507-7262549)
chr1 (105-151)||(24460394-24460440)
chr1 (99-149)||(31118082-31118132)
chr1 (97-155)||(31517719-31517777)
chr1 (105-155)||(37593671-37593721)
chr1 (97-155)||(38247032-38247090)
chr1 (105-150)||(4445746-4445791)
chr1 (97-150)||(4481968-4482021)
chr1 (108-141)||(4549714-4549747)
chr1 (113-150)||(5886989-5887026)
chr1 (108-149)||(27140517-27140558)
chr1 (108-149)||(29723528-29723569)
chr1 (105-150)||(39270412-39270457)
chr1 (96-149)||(45394154-45394207)
chr1 (114-150)||(5276331-5276367)
chr1 (105-149)||(12477274-12477318)
chr1 (115-155)||(30257716-30257756)
chr1 (107-155)||(34290269-34290317)
chr1 (97-149)||(35669011-35669063)
chr1 (123-155)||(38882917-38882949)
[»] chr5 (21 HSPs)
chr5 (4-55)||(41059904-41059955)
chr5 (107-150)||(15406001-15406044)
chr5 (97-155)||(42100344-42100403)
chr5 (96-150)||(7674686-7674740)
chr5 (97-155)||(10125697-10125755)
chr5 (105-155)||(13604836-13604886)
chr5 (105-155)||(17258870-17258920)
chr5 (105-150)||(21768184-21768229)
chr5 (97-149)||(499710-499762)
chr5 (96-155)||(18857376-18857435)
chr5 (97-144)||(39248143-39248190)
chr5 (108-155)||(41957441-41957488)
chr5 (107-149)||(1899193-1899235)
chr5 (96-150)||(2568696-2568750)
chr5 (108-150)||(22020357-22020399)
chr5 (108-149)||(2880537-2880578)
chr5 (99-156)||(3977340-3977397)
chr5 (107-155)||(14331400-14331448)
chr5 (97-149)||(17368715-17368767)
chr5 (105-149)||(37794685-37794729)
chr5 (96-132)||(42646947-42646983)
[»] chr2 (33 HSPs)
chr2 (96-154)||(5902527-5902585)
chr2 (96-149)||(1647275-1647328)
chr2 (97-155)||(40682373-40682432)
chr2 (98-149)||(44438819-44438870)
chr2 (97-147)||(787373-787423)
chr2 (101-155)||(35538674-35538728)
chr2 (101-155)||(35557108-35557162)
chr2 (97-149)||(28677638-28677690)
chr2 (98-146)||(40158760-40158808)
chr2 (97-149)||(43530090-43530142)
chr2 (97-132)||(1801724-1801759)
chr2 (96-155)||(44606088-44606147)
chr2 (97-131)||(4350747-4350781)
chr2 (73-155)||(7035525-7035604)
chr2 (105-155)||(12313160-12313210)
chr2 (107-149)||(29316764-29316806)
chr2 (97-155)||(35378511-35378569)
chr2 (105-155)||(35379003-35379053)
chr2 (107-149)||(43827942-43827984)
chr2 (105-150)||(680541-680586)
chr2 (102-155)||(1056113-1056166)
chr2 (96-155)||(7928275-7928336)
chr2 (105-150)||(33256778-33256823)
chr2 (99-148)||(33941949-33941998)
chr2 (108-149)||(34652026-34652067)
chr2 (96-149)||(41809223-41809276)
chr2 (97-149)||(41812070-41812123)
chr2 (109-149)||(1939323-1939363)
chr2 (98-150)||(2091014-2091066)
chr2 (105-149)||(10285899-10285943)
chr2 (102-150)||(10567095-10567143)
chr2 (97-149)||(38809365-38809417)
chr2 (99-155)||(43717117-43717173)
[»] scaffold0004 (1 HSPs)
scaffold0004 (106-149)||(98628-98671)
[»] chr4 (22 HSPs)
chr4 (105-155)||(28300286-28300336)
chr4 (106-155)||(23819122-23819171)
chr4 (97-146)||(37863933-37863982)
chr4 (99-155)||(38515866-38515920)
chr4 (97-141)||(1137759-1137803)
chr4 (105-149)||(1965980-1966024)
chr4 (105-149)||(17223023-17223067)
chr4 (97-149)||(39178245-39178297)
chr4 (96-155)||(49939928-49939988)
chr4 (107-150)||(56249562-56249605)
chr4 (105-151)||(7368041-7368087)
chr4 (99-149)||(20936210-20936260)
chr4 (97-147)||(23459669-23459719)
chr4 (97-147)||(39886632-39886682)
chr4 (105-150)||(2996611-2996656)
chr4 (97-150)||(25571298-25571351)
chr4 (108-149)||(29263409-29263450)
chr4 (114-154)||(19250580-19250620)
chr4 (97-141)||(19304973-19305017)
chr4 (97-149)||(29388823-29388875)
chr4 (95-139)||(42641616-42641660)
chr4 (104-155)||(55414405-55414457)
[»] scaffold0608 (1 HSPs)
scaffold0608 (97-150)||(9616-9669)
[»] scaffold0221 (1 HSPs)
scaffold0221 (110-150)||(2804-2844)


Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 497
Target Start/End: Original strand, 17770497 - 17770993
Alignment:
Q  1 caaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770497 caaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaa 17770596  T
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatcatcgaagatactgacttaacttaattttcccatataccctttg 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770597 cttgtgaaaacagcttatgacatgttcataaggtgctttcaacttatttttataatcatcgaagatactgacttaacttaattttcccatataccctttg 17770696  T
Q  201 agaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccctgaataattttggtgataatatatagtttaaatgttaacaatgtgatgtgaa 300  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17770697 agaaggataccaaagctaccaaagccaccaaagtccattgtcaaaccctgaataattttggtgataatatatagtttgaatgttaacaatgtgatgtgaa 17770796  T
Q  301 caataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaagagatttaagagagaagcaagtgaggaaaagtgatttat 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770797 caataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaagagatttaagagagaagcaagtgaggaaaagtgatttat 17770896  T
Q  401 ataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatgataaatggtgtctttttgagcttgtaaccttttgatttcggctgacag 497  Q
    |||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17770897 ataaaagaaagaaaggatgtggtaaaatagaaagttgaaacaaataatgataaatggtgtctttttgagcttgtaaccttttgatttcggctgacag 17770993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 1575925 - 1575690
Alignment:
Q  1 caaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||  ||  |||||||||||||||||             ||||||    
T  1575925 caaagataggttatgaaaatagctaataggttatgcaaatacaatataacttgatattggcactaactaattgttttgtga-------------caagaa 1575839  T
Q  101 cttgtgaaaacagcttatga-catgttcataaggtgttttcaacttatttttataatcatcgaagatactgacttaacttaattttcccatatacccttt 199  Q
    ||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||| | | ||||    
T  1575838 cttatgaaaacagcttatgaacatgtccataaggtgttttcaacttattttcataatcattgaagatactggcttaacttgattttcccatttgctcttt 1575739  T
Q  200 gagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct 249  Q
    |||||||||| |||||||||| |||||||||||||||| || ||||||||    
T  1575738 gagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct 1575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 187
Target Start/End: Complemental strand, 696627 - 696442
Alignment:
Q  3 aagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaact 102  Q
    |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| ||||||| |||||||| |||| ||| ||||    
T  696627 aagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagttttgtaagactgttgtttggcaaaaact 696528  T
Q  103 tgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgacttaacttaattttcc 187  Q
    | |||||||||||||||||||||||||||| |||||| | |||||  |  ||| |||||||||||  ||| |||||||| ||||||    
T  696527 tatgaaaacagcttatgacatgttcataagctgtttttagcttatcctcttaagtcatcgaagatcttgatttaacttagttttcc 696442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 696714 - 696622
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 167  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  696714 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 696622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 1576007 - 1575927
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 156  Q
    |||||||| |||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |||||    
T  1576007 ttgtgagaatgttgtttggcaagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 1575927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 31624182 - 31624122
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 156  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  31624182 aagaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataat 31624122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 23271999 - 23272088
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatcatcgaagata 167  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||  | ||||||| |||||||| |||||| | |||| |||||||||||    
T  23271999 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgac--gatcataagctgttttcagcttattctcataagcatcgaagata 23272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 769228 - 769180
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 146  Q
    |||||| |||||||| ||||||||||||||||||| |||||||||||||    
T  769228 gaacttatgaaaacatcttatgacatgttcataagctgttttcaactta 769180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 6647463 - 6647420
Alignment:
Q  112 agcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  6647463 agcttatgacatgttcataagatgttttcaacttattttcataa 6647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 34403937 - 34403894
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||||||||||||||||||||||| |||||||    
T  34403937 gaaaacaacttatgacatgttcataaggtgttttcaccttattt 34403894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 10616692 - 10616750
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| | |||||| ||||||||||||||||||| ||||||||  ||||||||||||    
T  10616692 agaacttatcaaaacaccttatgacatgttcataagctgttttcagtttatttttataa 10616750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 20368159 - 20368217
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||| ||||||||||||||||||| |  |||||||||||||| ||||    
T  20368159 agaacttatgaaaacaacttatgacatgttcataagctagtttcaacttattttcataa 20368217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 3738161 - 3738108
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| |||||| |||||||||||||||||| |||||| || |||||||||||||    
T  3738161 aagatcttgtggaaacagcttatgacatgtccataagctgctttcaacttattt 3738108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 4080999 - 4080955
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| |||||| |||||||||||| ||||||||||||||||    
T  4080999 tgaaaacaacttatgccatgttcataagttgttttcaacttattt 4080955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 5566164 - 5566208
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||    
T  5566164 tgaaaacagcttattacatgtccataagttgttttcaacttattt 5566208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 23272083 - 23272135
Alignment:
Q  3 aagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgat 55  Q
    |||||||| ||| ||||||||||||||||||||||||  ||| ||||||||||    
T  23272083 aagataggctattaaaatagctaatagtttatgcaaaggcaatataacttgat 23272135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 33887913 - 33887869
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||    
T  33887913 tgaaaatagcttatgacatgttcacaagttgttttcaacttattt 33887869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 26709793 - 26709828
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataa 131  Q
    ||||||||||||||||||||||||||||||| ||||    
T  26709793 aagaacttgtgaaaacagcttatgacatgtttataa 26709828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 2263283 - 2263225
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||| | |||||||||||||||  ||||||||||||| ||| |||||    
T  2263283 agaacttatgaaaacaacatatgacatgttcatagcgtgttttcaacttctttctataa 2263225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 4246490 - 4246444
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttata 154  Q
    ||||| || ||||||||| |||||| |||||||||||||||||||||    
T  4246490 aaacaactcatgacatgtccataagctgttttcaacttatttttata 4246444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 8331757 - 8331699
Alignment:
Q  166 tactgacttaacttaattttcccatataccctttgagaaggataccaaagctaccaaag 224  Q
    |||||| ||||||| |||| ||||| | |||| ||| ||||||||||||||||||||||    
T  8331757 tactgatttaacttgatttacccatttgccctctgacaaggataccaaagctaccaaag 8331699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 28641736 - 28641786
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||| ||||||||||||| |||||| | |||||||| ||||    
T  28641736 tgaaaacagcttataacatgttcataagctgtttttagcttattttcataa 28641786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 7931704 - 7931757
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| ||| |||||||| |||||||||||||| |||| |||||||| |||||||    
T  7931704 aagagcttatgaaaacaacttatgacatgttcttaagttgttttcagcttattt 7931757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 8035127 - 8035180
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||  ||||||| ||||||||||| ||||||  |||||||||||||||||    
T  8035127 agaacttaagaaaacaacttatgacatggtcataacttgttttcaacttatttt 8035180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 9667975 - 9668016
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  9667975 aaacaacttatgacatgtccataagctgttttcaacttattt 9668016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 33832252 - 33832305
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||| |||||||| ||||||||||||| ||||| |||||| | ||||||||    
T  33832252 agaacttatgaaaacaacttatgacatgtttataagttgtttttagcttatttt 33832305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 2027393 - 2027437
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||||| | |||||| |||||||| |||||||    
T  2027393 tgaaaacagcttatgacatttccataagctgttttcagcttattt 2027437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 22743564 - 22743520
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| ||||| ||||||||||||| |||||||| |||||||    
T  22743564 tgaaaacaacttattacatgttcataagctgttttcagcttattt 22743520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 114; Significance: 2e-57; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 15740451 - 15740686
Alignment:
Q  1 caaagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||  ||  |||||||||||||||||             ||||||    
T  15740451 caaagataggttatgaaaatagctaataggttatgcaaatacaatataacttgatattggcactaactaattgttttgtga-------------caagaa 15740537  T
Q  101 cttgtgaaaacagcttatga-catgttcataaggtgttttcaacttatttttataatcatcgaagatactgacttaacttaattttcccatatacccttt 199  Q
    ||| |||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| |||||||||| |||||||| |||||||||| | | ||||    
T  15740538 cttatgaaaacagcttatgaacatgtccataaggtgttttcaacttattttcataatcattgaagatactggcttaacttgattttcccatttgctcttt 15740637  T
Q  200 gagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccct 249  Q
    |||||||||| |||||||||| |||||||||||||||| || ||||||||    
T  15740638 gagaaggata-caaagctacctaagccaccaaagtcccctgccaaaccct 15740686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 3 - 187
Target Start/End: Original strand, 43219689 - 43219874
Alignment:
Q  3 aagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaact 102  Q
    |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| ||||||| |||||||| |||| ||| ||||    
T  43219689 aagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagttttgtaagactgttgtttggcaaaaact 43219788  T
Q  103 tgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgacttaacttaattttcc 187  Q
    | |||||||||||||||||||||||||||| |||||| | |||||  |  ||| |||||||||||  ||| |||||||| ||||||    
T  43219789 tatgaaaacagcttatgacatgttcataagctgtttttagcttatcctcttaagtcatcgaagatcttgatttaacttagttttcc 43219874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 3 - 139
Target Start/End: Complemental strand, 11048052 - 11047916
Alignment:
Q  3 aagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaact 102  Q
    |||||||  ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| ||||||| |||||||| |||| ||| ||||    
T  11048052 aagatagcctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagttttgtaagactgttgtttggcaaaaact 11047953  T
Q  103 tgtgaaaacagcttatgacatgttcataaggtgtttt 139  Q
    | | |||||| ||||||||||||||||||| ||||||    
T  11047952 tataaaaacaacttatgacatgttcataagctgtttt 11047916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 43219602 - 43219694
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 167  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  43219602 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 43219694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 167
Target Start/End: Complemental strand, 11048139 - 11048047
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 167  Q
    ||||||||||||| |||| ||||||||| | |||||| ||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  11048139 ttgtgagactgttatttggcaagaacttatcaaaacaacttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 11048047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 15740369 - 15740449
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 156  Q
    |||||||| |||| |||| ||||||||| |||||||| ||||||||||||||||||| |||||| |||||||||| |||||    
T  15740369 ttgtgagaatgttgtttggcaagaacttatgaaaacaacttatgacatgttcataagctgtttttaacttattttcataat 15740449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 19719097 - 19719039
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||| ||||||||||||||||||  |||||||| ||||| |||||||    
T  19719097 agaacttatgaaaacaacttatgacatgttcataaactgttttcagcttatctttataa 19719039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 39968012 - 39967958
Alignment:
Q  97 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttt 150  Q
    ||||||| ||||||||||||||| ||| ||||||||| |||||||||||||||||    
T  39968012 agaacttatgaaaacagcttatggcattgttcataagctgttttcaacttatttt 39967958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 20888377 - 20888425
Alignment:
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||| |||||| |||||||||||| |||||||| |||||||    
T  20888377 cttgtgaaaacaacttatgccatgttcataagttgttttcagcttattt 20888425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 34036010 - 34035955
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttt 150  Q
    |||||||| |||||| | |||||||||| ||||||||| |||||||||||||||||    
T  34036010 aagaacttatgaaaataacttatgacattgttcataagttgttttcaacttatttt 34035955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 9038203 - 9038150
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| | |||||||||||||||||||||||||  |||||||| ||||||||    
T  9038203 aagaacttataaaaacagcttatgacatgttcataa-ttgttttcagcttatttt 9038150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 25511707 - 25511665
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||||||||||  ||| ||||||||||||    
T  25511707 aaaacagcttatgacatgttcataaattgtcttcaacttattt 25511665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 36598346 - 36598387
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| ||||||||||||||||||| |||||||| |||||||    
T  36598346 aaacatcttatgacatgttcataagctgttttcagcttattt 36598387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 43250681 - 43250722
Alignment:
Q  100 acttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    |||| ||||||||||||||||||||||| |||| ||||||||    
T  43250681 acttatgaaaacagcttatgacatgttcgtaagttgttttca 43250722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 148
Target Start/End: Original strand, 6857329 - 6857369
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatt 148  Q
    |||||||||||| ||||| |||||| |||||||||||||||    
T  6857329 aaacagcttatgccatgtccataagttgttttcaacttatt 6857369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 22551392 - 22551436
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||||||||| | | |||||||| |||||||    
T  22551392 tgaaaacagcttatgacatgttcaaatgttgttttcagcttattt 22551436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 25596114 - 25596066
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||| |||  |||| ||||||||||||||||| ||||    
T  25596114 aaaacagcttatgacaagttactaagttgttttcaacttattttcataa 25596066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 6e-54; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 90 - 327
Target Start/End: Complemental strand, 5396295 - 5396075
Alignment:
Q  90 tttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagatactgacttaacttaattttccc 188  Q
    |||| ||||||||| |  ||||||||||||||||||| |||||||||||||| |||||||| |||| |||||||||||||||| ||||||| ||||||||    
T  5396295 tttgccaagaacttattgaaacagcttatgacatgttaataaggtgttttcagcttattttcataagtcatcgaagatactgatttaacttgattttccc 5396196  T
Q  189 atataccctttgagaaggataccaaagctaccaaagccaccaaagtcccttgtcaaaccctgaataattttggtgataatatatagtttaaatgttaaca 288  Q
    || ||||||||||||||||||||                  ||||||||  | |||||||||||||||| ||||||||| ||||||||| ||||||||||    
T  5396195 atttaccctttgagaaggatacc------------------aaagtccccggccaaaccctgaataattatggtgataaaatatagtttgaatgttaaca 5396114  T
Q  289 atgtgatgtgaacaataaggaaaagttagagaagtgaag 327  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5396113 atgtgatgtgaacaataaggaaaagttagagaagtgaag 5396075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 264 - 415
Target Start/End: Complemental strand, 5391869 - 5391726
Alignment:
Q  264 ataatatatagtttaaatgttaacaatgtgatgtgaacaataaggaaaagttagagaagtgaagggttaataagagattggttgtgatagagggtgaaga 363  Q
    |||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||      
T  5391869 ataacatatagtttgaatgttaacaatgtgatgtgaacaataaagaaaagttagagaagtgaaggcttaagaagagattggttgtgatagagggtgaatt 5391770  T
Q  364 gatttaagagagaagcaagtgaggaaaagtgatttatataacagaaagaaag 415  Q
    |||||||||||||        |||||||||||||||||||| ||||||||||    
T  5391769 gatttaagagaga--------aggaaaagtgatttatataaaagaaagaaag 5391726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 39723285 - 39723421
Alignment:
Q  3 aagataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgatatttacaagaactaattgttttgtgagactgttttttgacaagaact 102  Q
    |||||||| ||| ||||||||||||||||||||||||| ||| |||||||||| ||  ||||||||||| ||||||| |||||||| |||| ||| ||||    
T  39723285 aagataggctattaaaatagctaatagtttatgcaaaagcaatataacttgattttggcaagaactaatagttttgtaagactgttgtttggcaaaaact 39723384  T
Q  103 tgtgaaaacagcttatgacatgttcataaggtgtttt 139  Q
    | |||||||||||||||||||||||||||| ||||||    
T  39723385 tatgaaaacagcttatgacatgttcataagctgtttt 39723421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 167
Target Start/End: Original strand, 39723198 - 39723290
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa-tcatcgaagata 167  Q
    ||||||||||||| |||| ||||||||| | |||||||||||||||||||||||||| |||||||| |||||| | |||| ||||||||||||    
T  39723198 ttgtgagactgttatttggcaagaacttatcaaaacagcttatgacatgttcataagctgttttcagcttattctcataagtcatcgaagata 39723290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 90 - 155
Target Start/End: Complemental strand, 5391977 - 5391912
Alignment:
Q  90 tttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| ||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  5391977 tttggcaataacttatgaaaacagcttatgacatgttcataagctgttttcaacttattttcataa 5391912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 53762381 - 53762426
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||||||||||| |||||||||||||||||    
T  53762381 tgaaaacagcttatgacatgttcataagctgttttcaacttatttt 53762426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 45541663 - 45541618
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||    
T  45541663 aagaacttatgaaaacagcttatgacatgttcataagctgttttca 45541618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 3044249 - 3044296
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| ||||||||||||||||||| ||||||||||||||||| ||||    
T  3044249 aaacaacttatgacatgttcataagctgttttcaacttattttcataa 3044296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 34954173 - 34954115
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||||| ||||||||||||| || |||||||| |||||||| ||||    
T  34954173 aagaacttgtgaaaacagct-atgacatgttcatgagctgttttcagcttattttcataa 34954115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 39602188 - 39602247
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| ||| |||| ||||||||||||||||||||||  ||||||||||||||||| ||||    
T  39602188 aagagcttatgaagacagcttatgacatgttcataaattgttttcaacttattttcataa 39602247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 54837012 - 54837071
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| || |||||||||||||||||||||||||||  |||||||  |||||||||||||    
T  54837012 aagaatttatgaaaacagcttatgacatgttcataacttgttttccgcttatttttataa 54837071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 52440645 - 52440699
Alignment:
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| || ||||||||||||||||||||| ||||||||||| ||||| ||||    
T  52440645 cttgtgagaatagcttatgacatgttcataagttgttttcaactaattttcataa 52440699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 25925816 - 25925775
Alignment:
Q  114 cttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||| ||||||||||||||||| ||||    
T  25925816 cttatgacatgttcataagctgttttcaacttattttcataa 25925775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 36101650 - 36101601
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  36101650 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataa 36101601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 36139960 - 36139911
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||| ||||    
T  36139960 gaaaacagcttatgacatgttcacaagctgttttcagcttattttcataa 36139911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 29427624 - 29427676
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||| || |||||||||||||||| | ||||||||||||||    
T  29427624 agaacttatgaaaacacctaatgacatgttcataagctattttcaacttattt 29427676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 5166404 - 5166361
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| ||||||||||||||||| |||||||| ||||||||    
T  5166404 aaaacagcatatgacatgttcataagctgttttcatcttatttt 5166361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 21367759 - 21367700
Alignment:
Q  97 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||||||||||||| |||||| ||| |||||||| |||||||| ||||    
T  21367759 agaacttatgaaaacagcttatgacattgttcacaagctgttttcagcttattttcataa 21367700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 2152165 - 2152215
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||||||||||| |||| |||||||||||| ||| |||||    
T  2152165 tgaaaacaacttatgacatgttcgtaagctgttttcaacttgtttctataa 2152215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 3015830 - 3015880
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||||||||| |||||| |||||||| |||||||| ||||    
T  3015830 tgaaaacaacttatgacatgtccataagatgttttcatcttattttaataa 3015880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 26878292 - 26878238
Alignment:
Q  97 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||| ||||||||||| |||||||||  |||||||| ||||||||    
T  26878292 agaacttgtgaaaatagcttatgacattgttcataaactgttttcagcttatttt 26878238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 34707475 - 34707525
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 147  Q
    ||||||| |||||||| ||| |||||||| |||||| ||||||||||||||    
T  34707475 agaacttttgaaaacaacttgtgacatgtccataagttgttttcaacttat 34707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 155
Target Start/End: Complemental strand, 40665500 - 40665462
Alignment:
Q  117 atgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  40665500 atgacatgttcataagctgttttcagcttatttttataa 40665462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 53952139 - 53952081
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| ||||||||||| || |||||||||| || |||||||| |||||||| ||||    
T  53952139 agaacttatgaaaacagctgataacatgttcatgagctgttttcagcttattttcataa 53952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 54180759 - 54180817
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||  |||||||||||||||||| |||||| |||||| | ||||||| |||||    
T  54180759 agaacttgtagaaacagcttatgacatgtccataagttgtttttagcttatttatataa 54180817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 150
Target Start/End: Complemental strand, 13804856 - 13804815
Alignment:
Q  109 aacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||| |||||||||||| |||||| |||||||||||||||||    
T  13804856 aacaacttatgacatgtccataagctgttttcaacttatttt 13804815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 20192596 - 20192637
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||| |||||| ||||||||||| ||||    
T  20192596 aaacagcttatgacatgtccataagctgttttcaactcattt 20192637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 21754800 - 21754755
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| |||||||||||||||| || |||||||||||| ||||    
T  21754800 tgaaaacaacttatgacatgttcatcagttgttttcaacttgtttt 21754755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 23816311 - 23816254
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttattttta 152  Q
    |||||||||  ||||||| ||||| ||| ||||||||| |||||||||||||||||||    
T  23816311 aagaacttgaaaaaacaggttatggcattgttcataagctgttttcaacttattttta 23816254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 27290879 - 27290932
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| ||| ||||||||||||||||||||  |||||| |||||||| |||||||    
T  27290879 aagagcttatgaaaacagcttatgacatgcccataagctgttttcagcttattt 27290932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 37273214 - 37273173
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  37273214 aaacaacttatgacatgtccataagttgttttcaacttattt 37273173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 42745118 - 42745077
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| ||||||||||||||||||| |||||||| |||||||    
T  42745118 aaacaacttatgacatgttcataagttgttttcatcttattt 42745077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 23808045 - 23808101
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| ||||| |||||||||||||||||| ||  |||||||| |||||||| ||||    
T  23808045 aacttatgaaagcagcttatgacatgttcacaaattgttttcatcttattttcataa 23808101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 24624302 - 24624250
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatt 148  Q
    |||| ||| ||||||||||||||||||||| |||||  |||||||| ||||||    
T  24624302 aagagcttatgaaaacagcttatgacatgtccataaactgttttcagcttatt 24624250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 36769950 - 36770005
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| ||||||||||| |||||||||||| ||   ||||||| |||||||||||||    
T  36769950 agaacttatgaaaacagctcatgacatgttcacaa---gttttcatcttatttttataa 36770005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 38971341 - 38971297
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||| |||| |||||||| |||| ||||||||||||||||    
T  38971341 tgaaaacagtttataacatgttcgtaagctgttttcaacttattt 38971297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 49465644 - 49465696
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||||||||| |||||||||| |||| |||| | |||||||    
T  49465644 agaacttatgaaaacagcttattacatgttcattaggttttttaagcttattt 49465696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 381 - 450
Target Start/End: Original strand, 41066752 - 41066821
Alignment:
Q  381 agtgaggaaaagtgatttatataacagaaagaaaggatgtggtaaaacagaaagttgaaacaattaatga 450  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  |||||||||||    
T  41066752 agtgaggaaaagtgatttatataaaagaaagaaaggatgttgtaaaacagaaagttgggacaattaatga 41066821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 41066667 - 41066729
Alignment:
Q  316 agagaagtgaagggttaataaga---gattggttgtgatagagggtgaagagatttaagagag 375  Q
    ||||||||||||||||| |||||   |||||| ||||||||||||||||||||||||||||||    
T  41066667 agagaagtgaagggttattaagaagagattggctgtgatagagggtgaagagatttaagagag 41066729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 96 - 154
Target Start/End: Complemental strand, 3254317 - 3254259
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttata 154  Q
    ||||||||  ||||||||||||||||||||||||||| |||||||| ||||||| ||||    
T  3254317 aagaacttaagaaaacagcttatgacatgttcataagctgttttcagcttatttctata 3254259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 779039 - 779093
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||  ||||||| ||||||||||||||||||| |||||||| ||||||||    
T  779039 aagaacttacgaaaacaacttatgacatgttcataagttgttttcatcttatttt 779093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 1930127 - 1930073
Alignment:
Q  97 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||    
T  1930127 agaacttgtgaaaacagtttatgacattgttcataagctgttttcagcttatttt 1930073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 8629547 - 8629489
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||| ||||||||||| ||||||| |||||||||||| | |||||||    
T  8629547 agaacttatgaaaacaacttatgacatgatcataagttgttttcaacttctatttataa 8629489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 9835890 - 9835931
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||||||||||| |||||||| |||||||    
T  9835890 aaacagcttatgacatgttcataagctgttttcatcttattt 9835931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 3161604 - 3161660
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| |||||| | ||||||||||||||||||  |||||||| |||||||||||||    
T  3161604 aacttatgaaaataacttatgacatgttcataaaatgttttcagcttatttttataa 3161660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 12851265 - 12851209
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| |||||||||||||| ||||||||||||| |||||||  |||||||| ||||    
T  12851265 aacttatgaaaacagcttataacatgttcataagatgttttcggcttattttcataa 12851209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 42215293 - 42215337
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||| |||||||||| |||||||| |||||||    
T  42215293 tgaaaacagcttatgacttgttcataagctgttttcagcttattt 42215337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 10383975 - 10383924
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||| ||||||||||||||||||| |||||||| ||||| || |||||||    
T  10383975 gaacttatgaaaacagcttatgacattttcataagctgtttacagcttattt 10383924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 11770989 - 11771048
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||||| ||||||| ||||  ||| | ||||||||||||||||||||||    
T  11770989 aagaacttatgaaaacaacttatgatatgtctatacgttgttttcaacttatttttataa 11771048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 41606891 - 41606934
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    
T  41606891 gaaaacagcttatgacatgttcaaaagttgttttcagcttattt 41606934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 150
Target Start/End: Original strand, 11569447 - 11569489
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||| |||||| |||||||| ||||||||    
T  11569447 aaacagcttatgacatgtacataagttgttttcagcttatttt 11569489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 13459736 - 13459678
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| ||||||||||||||||||| |||||||  |||||||| | |||||| ||||    
T  13459736 agaacttatgaaaacagcttatgacattttcataaactgttttcagcctattttcataa 13459678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 20672825 - 20672783
Alignment:
Q  113 gcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||||| |||||||| |||||||| ||||    
T  20672825 gcttatgacatgttcataagctgttttcagcttattttcataa 20672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Complemental strand, 30389182 - 30389132
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||| |||| |||||||||||||||| |||||||| |||||||| ||||    
T  30389182 tgaaaatagctaatgacatgttcataagttgttttcagcttattttcataa 30389132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 148
Target Start/End: Original strand, 2594986 - 2595027
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatt 148  Q
    |||||| ||||||||||||||||||| |||||||| ||||||    
T  2594986 aaaacaacttatgacatgttcataagttgttttcagcttatt 2595027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 155
Target Start/End: Original strand, 11118993 - 11119034
Alignment:
Q  114 cttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||| |||||||| | |||||||||||    
T  11118993 cttatgacatgttcataagctgttttcagcatatttttataa 11119034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 11185301 - 11185260
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| ||||| ||||||||||||| ||||||||||||||||    
T  11185301 aaacatcttataacatgttcataagttgttttcaacttattt 11185260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 12361268 - 12361231
Alignment:
Q  112 agcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  12361268 agcttatgacatgtccataagctgttttcaacttattt 12361231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 43368687 - 43368732
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| |||||||||||||||| || | |||||||||||||||    
T  43368687 tgaaaacaacttatgacatgttcattagctattttcaacttatttt 43368732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 141
Target Start/End: Original strand, 2458545 - 2458589
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    ||||||| |||| |||||||||| |||||||||||| ||||||||    
T  2458545 agaacttatgaagacagcttatggcatgttcataagctgttttca 2458589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 3600735 - 3600775
Alignment:
Q  115 ttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  3600735 ttatgacatgtccataagttgttttcaacttattttcataa 3600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 6525625 - 6525657
Alignment:
Q  123 tgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||| ||||||||||||||||||||||    
T  6525625 tgttcataagctgttttcaacttatttttataa 6525657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 7918433 - 7918477
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| |||| |||||||||||||| ||||| ||||||||||    
T  7918433 tgaaaacaacttaagacatgttcataagctgtttccaacttattt 7918477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 14339602 - 14339642
Alignment:
Q  115 ttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||| |||||| ||||||||||||||||| ||||    
T  14339602 ttatgacatgtccataagttgttttcaacttattttcataa 14339642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 157
Target Start/End: Complemental strand, 14949949 - 14949897
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataatc 157  Q
    |||||| | |||||||||||| |||||| |||||||| ||||||| |||||||    
T  14949949 tgaaaataacttatgacatgtccataagctgttttcagcttatttctataatc 14949897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 39)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 10744392 - 10744334
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||    
T  10744392 agaacttgtgaaaacagcttatggcatgttcataagctgttttcatcttatttttataa 10744334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 35925780 - 35925729
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  35925780 gaacttatgaaaacagcttatgacatgttcataagctgttttcaacttattt 35925729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 37811943 - 37811891
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||||    
T  37811943 agaacttatgaaaacagcttatgacatgttcataaactgttttcaacttattt 37811891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 4549939 - 4549883
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttat 153  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||| |||||| ||||    
T  4549939 agaacttctgaaaacagattatgacatgttcataagttgttttcagcttattcttat 4549883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 6292574 - 6292526
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||||||||||| |||||||| |||||||| ||||    
T  6292574 aaaacagcttatgacatgttcataagctgttttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 10199395 - 10199445
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||| ||||    
T  10199395 tgaaaatagcttatgacatgttcataagttgttttcagcttattttcataa 10199445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 37842334 - 37842392
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||| || ||||||||||||||||  ||||||| |||||||||||||    
T  37842334 agaacttatgaaaacatctaatgacatgttcataagcagttttcagcttatttttataa 37842392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 38170677 - 38170722
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||||    
T  38170677 tgaaaacagcttatgacatgttcataagttgttttcagcttgtttt 38170722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 6262128 - 6262059
Alignment:
Q  76 ttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||    |||||| ||| ||| |||| ||||||||||||||||||| | ||||||||||||||    
T  6262128 ttgtgagactgttt----acaagagcttatgagaacaacttatgacatgttcataagctattttcaacttattt 6262059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 150
Target Start/End: Complemental strand, 10854815 - 10854771
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||||||||| ||| |||||||| ||||||||    
T  10854815 gaaaacagcttatgacatgttcacaagctgttttcagcttatttt 10854771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 38001687 - 38001643
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    ||||||| ||||||||||||||||| |||||||||| ||||||||    
T  38001687 agaacttatgaaaacagcttatgacctgttcataagttgttttca 38001643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 4699597 - 4699652
Alignment:
Q  100 acttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| |||||||| ||||||||||||||||||| |||||| | ||||||| |||||    
T  4699597 acttatgaaaacaacttatgacatgttcataagctgtttttagcttatttctataa 4699652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 11639394 - 11639453
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| ||| ||||||||||||||||||||| |||||| |||||| | |||||||| ||||    
T  11639394 aagagcttatgaaaacagcttatgacatgtccataagctgtttttagcttattttcataa 11639453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 11695941 - 11695894
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||| ||||||||||| |||||| ||||||||||||||||| ||||    
T  11695941 aaacagtttatgacatgtccataagctgttttcaacttattttcataa 11695894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 28689442 - 28689489
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  28689442 aaacagcttatgacatgtccataagttgttttcagcttattttcataa 28689489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 30815643 - 30815690
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||||||  |||||||| |||||||| ||||    
T  30815643 aaacagcttatgacatgttcataaaatgttttcagcttattttcataa 30815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 149
Target Start/End: Complemental strand, 47917310 - 47917275
Alignment:
Q  114 cttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||||| ||||||||||||||||    
T  47917310 cttatgacatgttcataagttgttttcaacttattt 47917275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Original strand, 1565513 - 1565567
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||  ||| |||||||||||||||| |||||| |||||||| ||||||||    
T  1565513 aagaacttaggaagacagcttatgacatgtgcataagctgttttcagcttatttt 1565567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 7218057 - 7218111
Alignment:
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||  ||||||||| ||||| ||| ||||||||||||||||| ||||    
T  7218057 cttgtgaaaacgacttatgacacgttcacaagctgttttcaacttattttcataa 7218111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 7262507 - 7262549
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  7262507 aaaacagcttttgacatgttcataagctgttttcaccttattt 7262549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 24460394 - 24460440
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattttt 151  Q
    |||||| ||||||||||||||||||||| ||||| || |||||||||    
T  24460394 tgaaaatagcttatgacatgttcataagctgtttccagcttattttt 24460440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 31118132 - 31118082
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| |||||||| |||||||||||||||| || |||||||| |||||||    
T  31118132 aacttatgaaaacatcttatgacatgttcatcagttgttttcagcttattt 31118082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 31517719 - 31517777
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| | |||||| || |||||||||||||||| |||||||| |||||||| ||||    
T  31517719 agaacttatcaaaacaactcatgacatgttcataagctgttttcagcttattttcataa 31517777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 37593671 - 37593721
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| ||| ||||||||||||||||||| |||||||| |||||||| ||||    
T  37593671 tgaacacaacttatgacatgttcataagctgttttcagcttattttcataa 37593721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 38247032 - 38247090
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| |||||||  ||||| ||| ||||||||| ||||||||||||| ||||||||    
T  38247032 agaacttatgaaaaccacttattacacgttcataagttgttttcaacttacttttataa 38247090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 4445791 - 4445746
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||| |||||||| ||||||||| ||| |||||||||||||||||    
T  4445791 tgaaagcagcttataacatgttcagaagctgttttcaacttatttt 4445746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 4482021 - 4481968
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||||    
T  4482021 agaacttatgaaaacaacttattacatgttcataagctgtttttagcttatttt 4481968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 141
Target Start/End: Complemental strand, 4549747 - 4549714
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttca 141  Q
    ||||||||||||||||||||||||| ||||||||    
T  4549747 aaacagcttatgacatgttcataagctgttttca 4549714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 150
Target Start/End: Original strand, 5886989 - 5887026
Alignment:
Q  113 gcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  5886989 gcttatgacatgttcataagttgttttcagcttatttt 5887026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 27140558 - 27140517
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||| |||||| |||||||| |||||||    
T  27140558 aaacagcttatgacatgtccataagttgttttcagcttattt 27140517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 29723569 - 29723528
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||| |||||  ||||||||||||||||    
T  29723569 aaacagcttatgacatgtccataaactgttttcaacttattt 29723528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 39270412 - 39270457
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||| || ||||| |||||| |||||||||||||||||    
T  39270412 tgaaaacagcttttggcatgtccataagctgttttcaacttatttt 39270457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 45394207 - 45394154
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||  ||||||||||||||| ||||  ||||| ||||||||||||||||    
T  45394207 aagaacttaagaaaacagcttatgagatgtcgataagctgttttcaacttattt 45394154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 150
Target Start/End: Complemental strand, 5276367 - 5276331
Alignment:
Q  114 cttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  5276367 cttatgacatgttcataagttgttttcaagttatttt 5276331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 12477274 - 12477318
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| ||||||||||||||| |||||| |||||||| |||||||    
T  12477274 tgaaagcagcttatgacatgtccataagttgttttcagcttattt 12477318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 30257756 - 30257716
Alignment:
Q  115 ttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||| |||||||| ||||||| |||||    
T  30257756 ttatgacatgttcataagctgttttcagcttatttctataa 30257716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 34290317 - 34290269
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||| |||||||||||| |||||||| |||||||| |||||||| ||||    
T  34290317 aaaaaagcttatgacatattcataagttgttttcagcttattttcataa 34290269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 35669063 - 35669011
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| ||||| |||||||||| |||| |||||  ||||||||||||||||    
T  35669063 agaacttatgaaagcagcttatgatatgtccataaattgttttcaacttattt 35669011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 38882917 - 38882949
Alignment:
Q  123 tgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||||||||||||| ||||    
T  38882917 tgttcataaggtgttttcaacttattttcataa 38882949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 41059955 - 41059904
Alignment:
Q  4 agataggttatgaaaatagctaatagtttatgcaaaaacaacataacttgat 55  Q
    ||||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  41059955 agataggctatgaaaatagctaatagtttatgcaaaaaaaatataacttgat 41059904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 15406001 - 15406044
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||||||||| ||||||||| |||||||    
T  15406001 aaaacagcttatgacatgttcataagctgttttcaatttatttt 15406044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Complemental strand, 42100403 - 42100344
Alignment:
Q  97 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||| |||||||||||| ||||| |||||||||||| |||||||| ||||    
T  42100403 agaacttgtgaaaatagcttatgacatagttcaaaaggtgttttcatcttattttcataa 42100344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 7674740 - 7674686
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| || ||||| ||||||||||||| |||||||||||||| ||||||||    
T  7674740 aagaacttatggaaacaacttatgacatgtttataaggtgttttcagcttatttt 7674686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 10125697 - 10125755
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| || ||||| ||||||||||||| |||||||||||||| |||||||| ||||    
T  10125697 agaacttatgtaaacaacttatgacatgttgataaggtgttttcagcttattttcataa 10125755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 13604836 - 13604886
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||||| |||| | ||||||||||||||||| ||||    
T  13604836 tgaaaacagcttatgacatgtccatacgttgttttcaacttattttcataa 13604886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 17258870 - 17258920
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||| ||||||||||||||||||||| |||||||| |||||||| ||||    
T  17258870 tgaaaatagcttatgacatgttcataagctgttttcagcttattttcataa 17258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 21768184 - 21768229
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||    
T  21768184 tgaaaacagcttatgacatgtccatacgctgttttcaacttatttt 21768229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 499710 - 499762
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||||||||||||||||| | ||| |||||||| |||||||    
T  499710 agaacttatgaaaacagcttatgacatgttaacaagttgttttcagcttattt 499762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 18857376 - 18857435
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| || ||||||||||| |||||||||||||||| |||||| |||||| ||| ||||    
T  18857376 aagaatttatgaaaacagctaatgacatgttcataagctgtttttaacttaatttcataa 18857435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 144
Target Start/End: Complemental strand, 39248190 - 39248143
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaact 144  Q
    ||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  39248190 agaacttataaaaacagcttatgacttgttcataagctgttttcaact 39248143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 41957441 - 41957488
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||| |||||| |||||||| |||||||| ||||    
T  41957441 aaacagcttatgacatgtccataagttgttttcatcttattttcataa 41957488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Complemental strand, 1899235 - 1899193
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||||||||| |||||| |||||||| |||||||    
T  1899235 aaaacagcttatgacatgtgcataagttgttttcagcttattt 1899193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 2568750 - 2568696
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| ||||||||||||||||||| |||||||| | |||| | ||||||||    
T  2568750 aagaacttatgaaaacagcttatgacatattcataagttatttttagcttatttt 2568696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 108 - 150
Target Start/End: Complemental strand, 22020399 - 22020357
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||||  ||||| |||||||||||||||||    
T  22020399 aaacagcttatgacatgtcaataagttgttttcaacttatttt 22020357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 2880537 - 2880578
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| |||| |||||||||||||||||||| |||||||    
T  2880537 aaacagctaatgatatgttcataaggtgttttcagcttattt 2880578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 156
Target Start/End: Complemental strand, 3977397 - 3977340
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataat 156  Q
    ||||| ||||||||||||||||||||||| | || ||| |||| |||||||| |||||    
T  3977397 aacttatgaaaacagcttatgacatgttccttagctgtcttcagcttattttcataat 3977340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 14331448 - 14331400
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||| |||||| || ||||| |||||||| ||||    
T  14331448 aaaacagcttatgacatgtccataagctgatttcagcttattttcataa 14331400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 17368767 - 17368715
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||| ||||||||||||||||| |  ||||||| |||||||    
T  17368767 agaacttatgaaaacaacttatgacatgttcatatgcagttttcagcttattt 17368715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 37794685 - 37794729
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| ||||||||||||||||||| |||||| | |||||||    
T  37794685 tgaaaacaacttatgacatgttcataagctgttttgagcttattt 37794729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 132
Target Start/End: Complemental strand, 42646983 - 42646947
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataag 132  Q
    |||||||| |||||| |||||||||||||||||||||    
T  42646983 aagaacttatgaaaatagcttatgacatgttcataag 42646947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 5902527 - 5902585
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttata 154  Q
    |||||||| |||||||||||||||||||||||||||  |||||||| ||| ||||||||    
T  5902527 aagaacttatgaaaacagcttatgacatgttcataaactgttttcagcttgtttttata 5902585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 1647328 - 1647275
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| |||||||||||||||||||| ||||||| |||||||| |||||||    
T  1647328 aagaacttatgaaaacagcttatgacatgctcataagctgttttcagcttattt 1647275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 40682373 - 40682432
Alignment:
Q  97 agaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||| |||| |||||||||||| ||||||||| ||||||||||||||||| ||||    
T  40682373 agaacttgttaaaatagcttatgacattgttcataagttgttttcaacttattttcataa 40682432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 44438819 - 44438870
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| |||||||||||||||||||||||||||||  |||||||| |||||||    
T  44438819 gaacatgtgaaaacagcttatgacatgttcataacctgttttcagcttattt 44438870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 787423 - 787373
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 147  Q
    ||||||| ||||||||||||||||||||| |||||| |||||||| |||||    
T  787423 agaacttatgaaaacagcttatgacatgtccataagctgttttcagcttat 787373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 35538674 - 35538728
Alignment:
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||| |||||    
T  35538674 cttgtgaaaatagcttatgacatgttcataagctgttttccgcttatttatataa 35538728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 101 - 155
Target Start/End: Original strand, 35557108 - 35557162
Alignment:
Q  101 cttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||| |||||    
T  35557108 cttgtgaaaatagcttatgacatgttcataagctgttttctgcttatttatataa 35557162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 28677638 - 28677690
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| ||||||||||||||||||| |||||||| |||||||  |||||||    
T  28677638 agaacttatgaaaacagcttatgacattttcataagttgttttcggcttattt 28677690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 146
Target Start/End: Complemental strand, 40158808 - 40158760
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 146  Q
    |||||| |||||||||||||||||||||| ||||| |||||||| ||||    
T  40158808 gaacttatgaaaacagcttatgacatgtttataagttgttttcagctta 40158760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 43530090 - 43530142
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| ||||||||| |||||||||||||| ||| | ||||||||||||||    
T  43530090 agaacttatgaaaacagattatgacatgttcacaagctattttcaacttattt 43530142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 132
Target Start/End: Complemental strand, 1801759 - 1801724
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataag 132  Q
    ||||||| ||||||||||||||||||||||||||||    
T  1801759 agaacttatgaaaacagcttatgacatgttcataag 1801724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 44606088 - 44606147
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||||| |||||||||||| |||||| |||||||| || ||||| ||||    
T  44606088 aagaacttatgaaaacaacttatgacatgtccataagttgttttcagctgattttcataa 44606147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 131
Target Start/End: Complemental strand, 4350781 - 4350747
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataa 131  Q
    ||||||| |||||||||||||||||||||||||||    
T  4350781 agaacttatgaaaacagcttatgacatgttcataa 4350747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 155
Target Start/End: Original strand, 7035525 - 7035604
Alignment:
Q  73 gttttgtgagactgttttttgacaagaacttgtgaaaacagcttatgacat-gttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||     |||||||| || |||||||||||||||  |||||||||||||||||  |||||||| ||||    
T  7035525 gttttgtgagactgttttg----aagaacttatggaaacagcttatgacacagttcataaggtgttttccgcttattttcataa 7035604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 12313160 - 12313210
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||| |||||||||||| || ||||| |||||||| ||||    
T  12313160 tgaaaacagcttatgccatgttcataagttgatttcaccttattttcataa 12313210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 29316764 - 29316806
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||||||||||| | |||||| |||||||    
T  29316764 aaaacagcttatgacatgttcataagttcttttcagcttattt 29316806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 35378511 - 35378569
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||| ||||||||||| ||||| |||||||||| | |||||| |||||||| ||||    
T  35378511 agaacttatgaaaacagctgatgacttgttcataagttattttcagcttattttcataa 35378569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 35379003 - 35379053
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||| ||||| |||||||||| |||||||| |||||||| ||||    
T  35379003 tgaaaacagctgatgacttgttcataagttgttttcagcttattttcataa 35379053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 43827942 - 43827984
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||||||||||||||||||||| || ||| |||||||||    
T  43827942 aaaacagcttatgacatgttcataagttgcttttaacttattt 43827984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 680586 - 680541
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||||| ||||  |||||||| ||||||||    
T  680586 tgaaaacagcttatgacatgtttataaactgttttcagcttatttt 680541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 1056113 - 1056166
Alignment:
Q  102 ttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||| |||||||||||||||| || |||||||| ||| |||| ||||    
T  1056113 ttgtgaaaacaacttatgacatgttcattagttgttttcagcttgttttcataa 1056166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 7928275 - 7928336
Alignment:
Q  96 aagaacttgtgaaaacagcttat-gaca-tgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| ||||    
T  7928275 aagaacttttgaaaacagcttatggacattgttcataagttgttttcagcttattttcataa 7928336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 33256823 - 33256778
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||||||||||||||||||||||  |||| ||| ||||||||    
T  33256823 tgaaaacagcttatgacatgttcataaactgttctcagcttatttt 33256778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 33941998 - 33941949
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatt 148  Q
    ||||| |||||||| ||||||||| ||||||||| || ||||||||||||    
T  33941998 aacttatgaaaacaacttatgacaagttcataagctgctttcaacttatt 33941949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Original strand, 34652026 - 34652067
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  34652026 aaacaacttatgacatgtccataagctgttttcaacttattt 34652067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 41809223 - 41809276
Alignment:
Q  96 aagaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| |||||| ||||| ||||||||||||||||||| |||||| | |||||||    
T  41809223 aagagcttgtggaaacaacttatgacatgttcataagttgtttttagcttattt 41809276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 41812070 - 41812123
Alignment:
Q  97 agaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttattt 149  Q
    ||||||| |||||||||||||||||| | |||||||| | ||||||||||||||    
T  41812070 agaacttttgaaaacagcttatgacatttttcataagcttttttcaacttattt 41812123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 149
Target Start/End: Original strand, 1939323 - 1939363
Alignment:
Q  109 aacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||| |||||||||||| |||||| ||||||||||||||||    
T  1939323 aacaacttatgacatgtccataagctgttttcaacttattt 1939363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 2091014 - 2091066
Alignment:
Q  98 gaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||| |||| ||||||||||| ||| ||||||| |||||||| ||||||||    
T  2091014 gaacttatgaatacagcttatgatatggtcataagctgttttcagcttatttt 2091066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 10285943 - 10285899
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||| | |||||||||||| |||||| ||||||||||||||||    
T  10285943 tgaaaataacttatgacatgtccataagctgttttcaacttattt 10285899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 150
Target Start/End: Complemental strand, 10567143 - 10567095
Alignment:
Q  102 ttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||| ||||||||||||||||| ||||||| |||||||| || |||||    
T  10567143 ttgtggaaacagcttatgacatgatcataagttgttttcagctaatttt 10567095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 38809417 - 38809365
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| | ||| |||||||||||||||| ||||  ||||||||||||||||    
T  38809417 agaacttattaaaccagcttatgacatgttaataatctgttttcaacttattt 38809365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 43717117 - 43717173
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    ||||| ||||||||||||| ||||| |||||| | |||||||| |||||||| ||||    
T  43717117 aacttatgaaaacagcttaggacattttcataggttgttttcagcttattttcataa 43717173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Original strand, 98628 - 98671
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  98628 gaaaatagcttatgacatgttcataagctgttttcaacttattt 98671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 155
Target Start/End: Original strand, 28300286 - 28300336
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||| |||||||||||| |||| ||||||||||||||||| ||||    
T  28300286 tgaaaacagcctatgacatgttcttaagttgttttcaacttattttcataa 28300336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 106 - 155
Target Start/End: Complemental strand, 23819171 - 23819122
Alignment:
Q  106 gaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||||||||||||||| |||||| |||||||| ||||||| |||||    
T  23819171 gaaaacagcttatgacatgtccataagttgttttcatcttatttctataa 23819122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 37863933 - 37863982
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaactta 146  Q
    ||||||| |||||||||||||||||| ||||||||| |||||||| ||||    
T  37863933 agaacttatgaaaacagcttatgacacgttcataagttgttttcacctta 37863982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 155
Target Start/End: Complemental strand, 38515920 - 38515866
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttttataa 155  Q
    |||||| ||||||||||||||||||  ||||||| |||||||| |||||||||||||    
T  38515920 aacttgggaaaacagcttatgacat--tcataagctgttttcagcttatttttataa 38515866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 1137803 - 1137759
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    ||||||| |||||||| ||||||||||||||||||| ||||||||    
T  1137803 agaacttatgaaaacatcttatgacatgttcataagttgttttca 1137759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 1966024 - 1965980
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| ||||||||||||||||||| |||||| |||||||||    
T  1966024 tgaaaacaacttatgacatgttcataagctgtttttaacttattt 1965980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 149
Target Start/End: Original strand, 17223023 - 17223067
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||| || |||||||||||||||||| ||||||||||||||||    
T  17223023 tgaaaatagtttatgacatgttcataagctgttttcaacttattt 17223067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 39178245 - 39178297
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||| ||||||| |||||||||| ||| ||||| ||||||||||||||||    
T  39178245 agaacttatgaaaaccgcttatgacacgttaataagatgttttcaacttattt 39178297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 49939928 - 49939988
Alignment:
Q  96 aagaacttgtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 155  Q
    |||||||| |||||| ||||||||||| |||||||||| |||||||| |||||| ||||||    
T  49939928 aagaacttatgaaaagagcttatgacattgttcataagctgttttcagcttattattataa 49939988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 56249605 - 56249562
Alignment:
Q  107 aaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||| |||||||| | |||||||||||||||    
T  56249605 aaaacagcttatgacattttcataagcttttttcaacttatttt 56249562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 151
Target Start/End: Original strand, 7368041 - 7368087
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttattttt 151  Q
    |||||||||||||||||||||| ||||| || ||||||| |||||||    
T  7368041 tgaaaacagcttatgacatgtttataagctgctttcaacatattttt 7368087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 20936210 - 20936260
Alignment:
Q  99 aacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||| |||||||| ||||||| ||||||||||| |||||||| |||||||    
T  20936210 aacttatgaaaacaacttatgatatgttcataagctgttttcaccttattt 20936260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 23459719 - 23459669
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 147  Q
    ||||||| |||||| ||||||||||||||| ||||| | ||||||||||||    
T  23459719 agaacttatgaaaaaagcttatgacatgttaataagttattttcaacttat 23459669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 147
Target Start/End: Original strand, 39886632 - 39886682
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttat 147  Q
    ||||||||||||| ||  |||||||||||||||||  ||||||||||||||    
T  39886632 agaacttgtgaaagcattttatgacatgttcataaattgttttcaacttat 39886682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Complemental strand, 2996656 - 2996611
Alignment:
Q  105 tgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    |||||||| |||||||||||| |||||| | |||||||||||||||    
T  2996656 tgaaaacaacttatgacatgtccataagcttttttcaacttatttt 2996611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 25571351 - 25571298
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||| || |||||| |||||| ||||||||||| |||||||| ||||||||    
T  25571351 agaacttatggaaacagtttatgatatgttcataagctgttttcagcttatttt 25571298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 29263450 - 29263409
Alignment:
Q  108 aaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  29263450 aaacagcttatgatatgttcataagttgttttcagcttattt 29263409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 19250620 - 19250580
Alignment:
Q  114 cttatgacatgttcataaggtgttttcaacttatttttata 154  Q
    |||||||||||| |||||| || ||||||||||||||||||    
T  19250620 cttatgacatgtccataagctgatttcaacttatttttata 19250580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 19305017 - 19304973
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttca 141  Q
    |||| ||||| |||||||||||||||||| |||||| ||||||||    
T  19305017 agaatttgtggaaacagcttatgacatgtccataagttgttttca 19304973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 29388875 - 29388823
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttattt 149  Q
    |||||||| |||||||||||| |||||||||||||  |||||  |||||||||    
T  29388875 agaacttgcgaaaacagcttaagacatgttcataatctgtttcaaacttattt 29388823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 42641616 - 42641660
Alignment:
Q  95 caagaacttgtgaaaacagcttatgacatgttcataaggtgtttt 139  Q
    ||||||||| |||||||| ||||||||||||||| ||| ||||||    
T  42641616 caagaacttatgaaaacaccttatgacatgttcacaagctgtttt 42641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 104 - 155
Target Start/End: Original strand, 55414405 - 55414457
Alignment:
Q  104 gtgaaaacagcttatgaca-tgttcataaggtgttttcaacttatttttataa 155  Q
    ||||||||||||||||||| | |||||||| | ||||||||||||||| ||||    
T  55414405 gtgaaaacagcttatgacatttttcataagcttttttcaacttattttcataa 55414457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0608 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0608
Description:

Target: scaffold0608; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 9616 - 9669
Alignment:
Q  97 agaacttgtgaaaacagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||| | ||||||||    
T  9616 agaacttatgaaaacaacttattacatgttcataagctgtttttagcttatttt 9669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 110 - 150
Target Start/End: Complemental strand, 2844 - 2804
Alignment:
Q  110 acagcttatgacatgttcataaggtgttttcaacttatttt 150  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  2844 acagcttatgacatgttcacaagctattttcaacttatttt 2804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University