View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_11 (Length: 345)
Name: NF3006_low_11
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_11 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 345
Target Start/End: Original strand, 10724770 - 10725098
Alignment:
| Q |
15 |
tcaattgcataaatataatcaaatgggtctatgagcattaaccatagattcatgttttacatatacttgaagcaattggagtctatgaaacactgacaca |
114 |
Q |
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| T |
10724770 |
tcaattgcataaatataatcaaatgggtctacgagcattaaccatagattcatgttt-acgtatacttgaagcaattggagtctatgaaacaccgagaca |
10724868 |
T |
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| Q |
115 |
aacatagatactcatatgttggcaccaacagtaatttgagaaaatgaaagtgatttatgtaacaacgatannnnnnnactgtcatgtcggcgacagacac |
214 |
Q |
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| T |
10724869 |
aacatagatactgatatgttgacaccaatagtaatttgagaaaatgaaagtgatttatgtaacaacgata-ttttttagtgtcatgtcggcgacggacac |
10724967 |
T |
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| Q |
215 |
caaacacacctttgatctgaaatgtcggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattt |
314 |
Q |
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| T |
10724968 |
tgaacacacctttgatctgaaatgttggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactacataattaaactaaagctggattt |
10725067 |
T |
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| Q |
315 |
tgagagaaagatattagtcaatgcagtagta |
345 |
Q |
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| T |
10725068 |
tgagagaaagatattagtcaaagcagtagta |
10725098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 224 - 335
Target Start/End: Complemental strand, 10730573 - 10730457
Alignment:
| Q |
224 |
ctttgatctgaaa-tgtcggtgctacatagattaaaattcattttgtaatttaaatgctcaatgactac----ataattaaactaaagctggattttgag |
318 |
Q |
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| T |
10730573 |
ctttgatctgaaagtgttggtgctatgtatattaaaatttattttgtaatttaaatgttcaatgactacgtatataataaaactaaagctggattttaat |
10730474 |
T |
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| Q |
319 |
agaaagatattagtcaa |
335 |
Q |
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| T |
10730473 |
agaaaaatattagtcaa |
10730457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Complemental strand, 16199268 - 16199219
Alignment:
| Q |
204 |
gcgacagacaccaaacacacctttgatctgaaatgtcggtgctacataga |
253 |
Q |
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| T |
16199268 |
gcgacagacaccaaacaagcctttgatcagaaatgtcggtgctacataga |
16199219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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