View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_12 (Length: 334)
Name: NF3006_low_12
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 30772087 - 30771814
Alignment:
| Q |
17 |
tccatacaggcaaaccgaaaatgcaagaggagtaaacagaaaattagccgtaaagagattgtgaaagattattgttcaatatgtggaactagaagtaacc |
116 |
Q |
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| T |
30772087 |
tccatacaggcaaaccgaaaatgcaagaggagtaaacagaaaattagccgtaaagatattgtgaaagattattgttcaatatgtggaactagaagtaacc |
30771988 |
T |
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| Q |
117 |
attaaaccatacctttcaccttttttgagtcaaaacctatggccgagctatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30771987 |
attaaaccatacctttcaccttttttgagtcaaaacctatggccgacatatatagtgttaatgccaaattggtcttgtgtcaatattaatgagcatttaa |
30771888 |
T |
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| Q |
217 |
ggtttatttaaaagcgtgagatgtgannnnnnnaagttgaaggtcctagtgaactcagatgatagaaacaatat |
290 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| || ||||| |
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| T |
30771887 |
ggtttatttaaaagcgtgagatgtgatttttttaagttgaaggttctagtgaactcagattataggaataatat |
30771814 |
T |
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