View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_low_15 (Length: 275)

Name: NF3006_low_15
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_low_15
NF3006_low_15
[»] chr7 (4 HSPs)
chr7 (19-122)||(28180459-28180566)
chr7 (29-93)||(30120205-30120269)
chr7 (30-106)||(30125252-30125328)
chr7 (127-201)||(30124520-30124592)
[»] scaffold1051 (1 HSPs)
scaffold1051 (32-93)||(1971-2032)
[»] chr2 (2 HSPs)
chr2 (31-116)||(21430160-21430244)
chr2 (29-110)||(21426470-21426551)
[»] chr8 (2 HSPs)
chr8 (30-115)||(41311298-41311383)
chr8 (31-115)||(43164977-43165061)
[»] chr5 (1 HSPs)
chr5 (29-90)||(29261370-29261431)


Alignment Details
Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 122
Target Start/End: Original strand, 28180459 - 28180566
Alignment:
Q  19 agcagcaactatataaggtaaatgagaaccacactcaat----atgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatac 114  Q
    ||||||||| ||||||||||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28180459 agcagcaaccatataaggtaattgagaaccacactcaattaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatac 28180558  T
Q  115 cgggtcaa 122  Q
    ||| ||||    
T  28180559 cggatcaa 28180566  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 30120205 - 30120269
Alignment:
Q  29 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctc 93  Q
    ||||||||||||||| |||||  |||||  |||||||||||||||| ||||||||||||||||||    
T  30120205 atataaggtaaatgaaaaccaacctcaacttgtttccacttattagttctcaatgagaaaatctc 30120269  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 30125252 - 30125328
Alignment:
Q  30 tataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaa 106  Q
    ||||||| ||||||||| || ||||||| |  | |||||||||||||||||||| ||||||||| || |||||||||    
T  30125252 tataaggcaaatgagaatcaaactcaatttcctcccacttattagctctcaatgggaaaatctccaagtcaattgaa 30125328  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 30124520 - 30124592
Alignment:
Q  127 aaataaaatgaagatgatgaagttcatgtaccaaccctactctcaatattgttctgctttgcatatccttcaatt 201  Q
    ||||||||| |||||| |||||||||||||||||  ||||||| ||||  ||| ||  |||||||||||||||||    
T  30124520 aaataaaataaagatgctgaagttcatgtaccaattctactcttaata--gttatgtcttgcatatccttcaatt 30124592  T

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Target: scaffold1051 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 93
Target Start/End: Original strand, 1971 - 2032
Alignment:
Q  32 taaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctc 93  Q
    ||||| ||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1971 taaggcaaaggagaaccaaactcaatttgtttccacttattagctctcaatgagaaaatctc 2032  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 21430244 - 21430160
Alignment:
Q  31 ataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagataccg 116  Q
    |||||| ||||||||| ||  |||||| | |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||    
T  21430244 ataaggcaaatgagaagcaacctcaattt-tttccattgattagctctcaatgagaaaatctctaagtcaattgaactagataccg 21430160  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 110
Target Start/End: Complemental strand, 21426551 - 21426470
Alignment:
Q  29 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactag 110  Q
    |||||||| ||||||||| ||  |||||| |||||||| |||| ||||||||||||||||||||  || |||||||||||||    
T  21426551 atataaggcaaatgagaagcaacctcaatttgtttccatttatgagctctcaatgagaaaatcttcaagtcaattgaactag 21426470  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 41311298 - 41311383
Alignment:
Q  30 tataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatacc 115  Q
    ||||||| |||| |||| || ||||||| |||| ||| | |||| ||||||||||||||||||| || ||||||||||||||||||    
T  41311298 tataaggcaaatcagaatcaaactcaatttgttcccattgattacctctcaatgagaaaatctccaagtcaattgaactagatacc 41311383  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 43164977 - 43165061
Alignment:
Q  31 ataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaatctctaattcaattgaactagatacc 115  Q
    |||||| |||| |||| || ||||||| |||| ||| | |||||||||||||||||||||||| || ||||| ||||||||||||    
T  43164977 ataaggcaaatcagaatcaaactcaatttgttcccattcattagctctcaatgagaaaatctccaagtcaatcgaactagatacc 43165061  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 29261431 - 29261370
Alignment:
Q  29 atataaggtaaatgagaaccacactcaatatgtttccacttattagctctcaatgagaaaat 90  Q
    ||||||||||||||| |||||   ||||  |||||| |||||||||||||||||||||||||    
T  29261431 atataaggtaaatgaaaaccaacatcaacttgtttctacttattagctctcaatgagaaaat 29261370  T

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