View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_17 (Length: 268)
Name: NF3006_low_17
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 218
Target Start/End: Complemental strand, 15154878 - 15154802
Alignment:
| Q |
140 |
ctatcgatcttaaacttttaattaaattaaacctatacaatgaaaactataagttaatagaattattctattgatatcc |
218 |
Q |
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| T |
15154878 |
ctatcgatcttaaacttttaattaaattaaacctatataatgaaaac--taagttaatagaattattctattgatatcc |
15154802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15155022 - 15154956
Alignment:
| Q |
1 |
atatatattcacttttgttgatttatatgtcttttataaaaacaacatgaaggagcattacttttcc |
67 |
Q |
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| T |
15155022 |
atatatattcacttttgttgatttatatgtcttttataaaaagaacatgaaggagtattacttttcc |
15154956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 268
Target Start/End: Complemental strand, 15154785 - 15154757
Alignment:
| Q |
240 |
tctattgatatgaatatacagctgctcta |
268 |
Q |
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| T |
15154785 |
tctattgatatgaatatacagctgctcta |
15154757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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