View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_low_18 (Length: 261)

Name: NF3006_low_18
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_low_18
NF3006_low_18
[»] chr7 (9 HSPs)
chr7 (122-261)||(34721426-34721565)
chr7 (12-261)||(34727740-34727989)
chr7 (12-261)||(18928737-18928986)
chr7 (16-257)||(34715870-34716114)
chr7 (200-261)||(34730898-34730959)
chr7 (13-173)||(34717711-34717871)
chr7 (208-261)||(18924027-18924080)
chr7 (12-261)||(34735497-34735746)
chr7 (16-71)||(18923835-18923890)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 122 - 261
Target Start/End: Complemental strand, 34721565 - 34721426
Alignment:
Q  122 tggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaatgtcggggaa 221  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  34721565 tggcaagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaacgaagggagtttcctcctaaatgtcggggaa 34721466  T
Q  222 gtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34721465 gtttgggaacaagacaatggccaagtttctttacaacaac 34721426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34727989 - 34727740
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    |||||||||||||||||||||||||| || |||||||| |||||||  |||||||||||| | ||| || |||   || | |||  ||  ||| ||||||    
T  34727989 acagacttattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttattcaactactgaacaatcaagaatcaaaagaccctttactgc 34727890  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    |||| ||||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |      || ||||||||||||    
T  34727889 ttggaatatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgaggcgaagagtttcctcctaaa 34727790  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| ||||||||||||||||||| |||||   ||||||| |||||||||    
T  34727789 tgtcagggaagtttgggaacaagataatggtgtagtttctctacaacaac 34727740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 12 - 261
Target Start/End: Original strand, 18928737 - 18928986
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    ||||| |||||||||||||||||||| || |||||||| |||||||  ||||||||| || | |||||| || |  |  | |||  ||  ||| ||||||    
T  18928737 acagaattattcgttgcagaccatccagtgggggtagattctcgtgttcaagatgttgttcaactattgaactgtcacgaatcaaaagaccctttactgc 18928836  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    |||| ||||| ||   |||||||||||| |||||||| ||||||||| |  ||||||||||| | ||||||  |||| |   |  || ||||||||||||    
T  18928837 ttggaatatggggtatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcgtcacgattttgatgcaaagagtttcctcctaaa 18928936  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| |||||| ||||||||| || ||||| || |||||| |||||||||    
T  18928937 tgtcagggaagattgggaacacgataatgggcaggtttctctacaacaac 18928986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 34716114 - 34715870
Alignment:
Q  16 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgcttgg 115  Q
    ||||||| ||||| |||||||| || ||||| |||||||||| |||||| |||||| | ||| |  |   |  ||| |||| || |||| ||||||||||    
T  34716114 acttatttgttgcggaccatccagtgggggtggaatctcgtgtacaagaggttattcaactactaaaatcccgacaatcagaagatcctgtactgcttgg 34716015  T
Q  116 gatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtc---actcttttaactaagggaatttcctcctaaat 212  Q
    |||||| ||||  |||||||||||||||||||| ||||| ||| |   ||||||| || ||| ||   ||  |||| |   | |||  |||||| |||||    
T  34716014 gatatggggcggaggagggatcggtaaaacaacaattgccaaagcagtttataatgaaatccatcgccaccattttgaggcaaggagcttcctcttaaat 34715915  T
Q  213 gtcggggaagtttgggaacaagacaatggccaagtttctttacaa 257  Q
    ||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  34715914 gtcggtgaagtttggaaacaagataatggcgaagtttctttacaa 34715870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 200 - 261
Target Start/End: Complemental strand, 34730959 - 34730898
Alignment:
Q  200 tttcctcctaaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||||||||||||||| ||||||||||||||||||| ||||||  ||||||| |||||||||    
T  34730959 tttcctcctaaatgtcagggaagtttgggaacaagataatggcatagtttctctacaacaac 34730898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 173
Target Start/End: Complemental strand, 34717871 - 34717711
Alignment:
Q  13 cagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgct 112  Q
    |||||||||| ||||  |||||||| || | ||| |||||| ||| ||||||||||||| | ||  || ||||| |||| |||  ||   |||||||| |    
T  34717871 cagacttatttgttgtggaccatccagtcgaggttgaatcttgtgtacaagatgttatttaacttctgaacagccaacaatcaaaagactctctactgat 34717772  T
Q  113 tgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaa 173  Q
    ||||||||| |||  ||||||||| |  |||||||||||||||||||||  ||||||||||    
T  34717771 tgggatatgaggcatgggagggattgacaaaacaaccattgctaaatccggttataataaa 34717711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 208 - 261
Target Start/End: Original strand, 18924027 - 18924080
Alignment:
Q  208 taaatgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||||||| || |||||||||||||||| |||||| ||||||||||||||||||    
T  18924027 taaatgtccggcaagtttgggaacaagataatggcgaagtttctttacaacaac 18924080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 261
Target Start/End: Complemental strand, 34735746 - 34735497
Alignment:
Q  12 acagacttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttattaacctattgtacagcaaacagtcagcaggtcctctactgc 111  Q
    ||||||||||| ||||| ||||||||||| |||||| | |||||||  |||||| | ||| | |||||| ||||  || | |||  |   ||| ||||||    
T  34735746 acagacttatttgttgcggaccatccggtgggggtaaagtctcgtgttcaagatatcattcaactattgaacagtcaagaatcaaaatcccctttactgc 34735647  T
Q  112 ttgggatatgtggcgagggagggatcggtaaaacaaccattgctaaatccacttataataaactccgtcactcttttaactaagggaatttcctcctaaa 211  Q
    | ||  |||| |||  |||||||||||| |||||||| ||||||||| |  ||||||||||| | | ||||  |||| |      || |||||||| |||    
T  34735646 tcggagtatggggcatgggagggatcggcaaaacaacaattgctaaagctgcttataataaaattcatcacgattttgaggcgaagagtttcctcccaaa 34735547  T
Q  212 tgtcggggaagtttgggaacaagacaatggccaagtttctttacaacaac 261  Q
    |||| ||||||| ||||||||||| ||||||  ||||||| |||||||||    
T  34735546 tgtcagggaagtctgggaacaagataatggcgtagtttctctacaacaac 34735497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 18923835 - 18923890
Alignment:
Q  16 acttattcgttgcagaccatccggtaggggtagaatctcgtgcacaagatgttatt 71  Q
    ||||||||||||| |||||||| || ||||| |||||||||| |||||| ||||||    
T  18923835 acttattcgttgcggaccatcctgtgggggttgaatctcgtgtacaagaggttatt 18923890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University