View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3006_low_20 (Length: 249)

Name: NF3006_low_20
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3006_low_20
NF3006_low_20
[»] chr2 (16 HSPs)
chr2 (1-238)||(39427309-39427546)
chr2 (17-173)||(39495162-39495318)
chr2 (18-172)||(39129781-39129935)
chr2 (2-157)||(39123835-39123990)
chr2 (104-173)||(39602327-39602396)
chr2 (110-173)||(39391525-39391588)
chr2 (110-173)||(44896048-44896111)
chr2 (41-173)||(39398794-39398926)
chr2 (41-155)||(39478960-39479074)
chr2 (110-173)||(39369587-39369650)
chr2 (55-173)||(39220498-39220616)
chr2 (189-234)||(39123743-39123788)
chr2 (188-233)||(39220423-39220468)
chr2 (112-173)||(39381927-39381988)
chr2 (110-174)||(39161239-39161303)
chr2 (110-174)||(39207891-39207955)
[»] chr5 (1 HSPs)
chr5 (104-173)||(33559773-33559842)
[»] chr6 (1 HSPs)
chr6 (41-166)||(16112632-16112757)


Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 39427309 - 39427546
Alignment:
Q  1 ctccaccatttgagttcgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgt 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39427309 ctccaccatttgagtttgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgt 39427408  T
Q  101 tttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagagtgtcgagtttcctttccttgtcaatgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39427409 tttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaatttttcgggaaagagtgtcgagtttcctttccttgtcaatgt 39427508  T
Q  201 tatccttgacttgacgaagttctgtttcttttgttctg 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  39427509 tatccttgacttgacgaagttctgtttcttttgttctg 39427546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 39495162 - 39495318
Alignment:
Q  17 cgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcac 116  Q
    ||||||||||||||||||||||| |||| | | ||||||||  |||||||  | | ||||| ||| ||||||||||||||| |||||||||| | |||||    
T  39495162 cgtggatcattcttacttaattgcattatcctaagtaactttatcctttccaactctaatcgttcagcttgttcgtcaattagttttttcattgtatcac 39495261  T
Q  117 gctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
     |||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||    
T  39495262 actctttctctttggccttaagttccacagaacattgagcaattttttgggaaagag 39495318  T

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Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 39129935 - 39129781
Alignment:
Q  18 gtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacg 117  Q
    |||||||||||||||| |||||  ||||||| ||||||||||||||||| || | || | |||||||||||  |||||||  ||| ||||| ||||||||    
T  39129935 gtggatcattcttactcaattgggttaccttgagtaacttcttcctttcagactctagtatttctgcttgtctgtcaattaatttcttcattgcatcacg 39129836  T
Q  118 ctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaaga 172  Q
    ||||||||||||  |||| |||||||||||||| | |||||| ||||||||||||    
T  39129835 ctctttctctttgctcttgagttccacagtacactgagcaatattttgggaaaga 39129781  T

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Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 157
Target Start/End: Complemental strand, 39123990 - 39123835
Alignment:
Q  2 tccaccatttgagttcgtggatcattcttacttaattgaattaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgtt 101  Q
    |||| ||||||||  ||| ||||||||||||||||||| |||||  |||| |||||| ||||||| || | |||||||||||| |||||||||||||| |    
T  39123990 tccatcatttgagcacgttgatcattcttacttaattgcattacgctcagaaacttcatcctttccgactctaatctttctgcctgttcgtcaatttgct 39123891  T
Q  102 ttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagca 157  Q
    ||||||| || | |  |  ||||||||| ||||||||||||| |||||||||||||    
T  39123890 ttttcattgctttaatcagtttctctttggtcttaagttccaaagtacattcagca 39123835  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 39602396 - 39602327
Alignment:
Q  104 ttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    ||||| |||||| ||||| ||||||| | ||||||||||| |||| ||||||||||||||||||||||||    
T  39602396 ttcattgcatcaagctctatctctttggccttaagttccaaagtaaattcagcaattttttgggaaagag 39602327  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 39391525 - 39391588
Alignment:
Q  110 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    |||||| | ||||||||||| | || ||||||||||||||||||| ||||||||||||||||||    
T  39391525 gcatcaagatctttctctttggcctgaagttccacagtacattcaacaattttttgggaaagag 39391588  T

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Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 44896048 - 44896111
Alignment:
Q  110 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    |||||| | ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||    
T  44896048 gcatcaaggtctttctctttggccttaagttccatagtacattcatcaattttttgggaaagag 44896111  T

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Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 173
Target Start/End: Original strand, 39398794 - 39398926
Alignment:
Q  41 attaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacgctctttctctttagtcttaagtt 140  Q
    |||||||| ||||||||||||||||| || | |||  ||||||||||| ||  || |  | ||||||| |||||| ||||||||||||| | ||  ||||    
T  39398794 attacctttagtaacttcttcctttccgactctaaaatttctgcttgtccgctaactaatattttcattgcatcaagctctttctctttggactctagtt 39398893  T
Q  141 ccacagtacattcagcaattttttgggaaagag 173  Q
    ||| | ||||||| |||| |||||||| |||||    
T  39398894 ccatattacattcggcaactttttgggcaagag 39398926  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 39478960 - 39479074
Alignment:
Q  41 attaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacgctctttctctttagtcttaagtt 140  Q
    |||||||| |||| |||||||||||  || | |||| ||||||||||| ||  ||||  | ||||||| |||||| |||||| ||| || ||||||||||    
T  39478960 attacctttagtaccttcttcctttaagactctaatatttctgcttgtccgctaattgatattttcattgcatcaagctcttgctcgttggtcttaagtt 39479059  T
Q  141 ccacagtacattcag 155  Q
    ||| | |||||||||    
T  39479060 ccagattacattcag 39479074  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 173
Target Start/End: Complemental strand, 39369650 - 39369587
Alignment:
Q  110 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    |||||| ||||| ||||||| | | ||| ||||||||||  |||||||||||||||||||||||    
T  39369650 gcatcaagctctatctctttggccataaattccacagtaatttcagcaattttttgggaaagag 39369587  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 39220616 - 39220498
Alignment:
Q  55 cttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacgctctttctctttagtcttaagttccacagtacattca 154  Q
    |||||||||||| |||| |||  |||||||||||||  |||||  ||| ||||  |||||| |||| |||||||| | ||||   |||| || |  ||||    
T  39220616 cttcttcctttcagattctaacttttctgcttgttcaccaattaatttgttcactgcatcaagctcgttctctttggccttacagtccaaagcaagttca 39220517  T
Q  155 gcaattttttgggaaagag 173  Q
    |||||||||||||||||||    
T  39220516 gcaattttttgggaaagag 39220498  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 39123788 - 39123743
Alignment:
Q  189 ccttgtcaatgttatccttgacttgacgaagttctgtttcttttgt 234  Q
    |||| |||||||||||| ||| ||||| ||||||||||||||||||    
T  39123788 ccttatcaatgttatccatgatttgacaaagttctgtttcttttgt 39123743  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 39220468 - 39220423
Alignment:
Q  188 tccttgtcaatgttatccttgacttgacgaagttctgtttcttttg 233  Q
    ||||| |||||||||||  ||||||||||||||||| |||||||||    
T  39220468 tccttatcaatgttatcaatgacttgacgaagttctatttcttttg 39220423  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 173
Target Start/End: Original strand, 39381927 - 39381988
Alignment:
Q  112 atcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    |||| ||||| ||||||| | ||||||||||| | || |||||||||||| |||||||||||    
T  39381927 atcaagctctatctctttggccttaagttccaaaataaattcagcaatttgttgggaaagag 39381988  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Complemental strand, 39161303 - 39161239
Alignment:
Q  110 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagagt 174  Q
    |||||| | |||| |||||| ||||||||| ||| ||||||||||| || |||| ||||||||||    
T  39161303 gcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagt 39161239  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 39207891 - 39207955
Alignment:
Q  110 gcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagagt 174  Q
    |||||| | |||| |||||| ||||||||| ||| ||||||||||| || |||| ||||||||||    
T  39207891 gcatcaagatcttcctctttggtcttaagtaccaaagtacattcagtaacttttagggaaagagt 39207955  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 33559842 - 33559773
Alignment:
Q  104 ttcatcgcatcacgctctttctctttagtcttaagttccacagtacattcagcaattttttgggaaagag 173  Q
    |||||||||||| | |||||||||||   || |||||||||||||||||||||||  |||||||||||||    
T  33559842 ttcatcgcatcaagatctttctctttgacctgaagttccacagtacattcagcaaccttttgggaaagag 33559773  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 16112757 - 16112632
Alignment:
Q  41 attaccttcagtaacttcttcctttctgattttaatctttctgcttgttcgtcaatttgttttttcatcgcatcacgctctttctctttagtcttaagtt 140  Q
    |||||||| ||||||| ||||||||| || | |||| |||| |||||| ||  ||||  | ||||||| |||||| |||||||||| || | ||||||||    
T  16112757 attacctttagtaactgcttcctttcggactctaatatttccgcttgtccgctaattgatattttcattgcatcaagctctttctccttggacttaagtt 16112658  T
Q  141 ccacagtacattcagcaattttttgg 166  Q
    ||| | ||| ||| |||| |||||||    
T  16112657 ccagattaccttccgcaactttttgg 16112632  T

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