View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_27 (Length: 229)
Name: NF3006_low_27
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_27 |
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| [»] scaffold0691 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 211
Target Start/End: Original strand, 2797786 - 2797986
Alignment:
| Q |
11 |
catcatcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2797786 |
catcatcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacaacttgcaacttttgacaccaaacaaatcatgg |
2797885 |
T |
|
| Q |
111 |
gaactcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2797886 |
gaactcttctgcaagaaagcattcagatttgaggttggtgggcattgtccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagc |
2797985 |
T |
|
| Q |
211 |
t |
211 |
Q |
| |
|
| |
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|
| T |
2797986 |
t |
2797986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 2790749 - 2790945
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
2790749 |
atcaccactagaatgatgcaagttgcagattttttcaagaaatcttttctagttcatgttcacaacttgcaacttttgacaccaaacaaagcatgggaac |
2790848 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
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| T |
2790849 |
tcttctgcaagaaagcattcagatttgagcttggtgggcattgtccaccagagcttaagttcatgtcaaaagaaattgttcgaaaatgcaagcagct |
2790945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 2807696 - 2807892
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
2807696 |
atcacaactagaatgatgcaagttgcagattttttcaagaaatcctttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaac |
2807795 |
T |
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| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
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||||||||||||||| ||| ||||| || ||| |||||| || ||||| |||||| | | ||||||||||| || |||||||||||||||||||| |
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| T |
2807796 |
tcttctgcaagaaagtatttagattcgatcttgatgggcactgtccaccggagcttgaggctatgtcaatagatattgttcgaaaatgcaagcagct |
2807892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 211
Target Start/End: Original strand, 2769501 - 2769694
Alignment:
| Q |
18 |
accacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaactct |
117 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||| | || |||||| |||||||||||| |
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| T |
2769501 |
accacaagaatgatgcatgttgcagattttttcaagaaatcctttctagttcatgttcttaacatgcaacttttgcctcctaacaaagcatgggaactct |
2769600 |
T |
|
| Q |
118 |
tctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||| || |||||||||||| | |||||||| | |||||| |||||||||||||||||||| |
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| T |
2769601 |
tctgcaagaaagcattcagatttgaacttgatgggcaatgtccaccagagcttcagtccatgtctaaagaaattgttcgaaaatgcaagcagct |
2769694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 151
Target Start/End: Original strand, 2818986 - 2819122
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
2818986 |
atcaccacaagaatgatgcaagttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaac |
2819085 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgg |
151 |
Q |
| |
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||||||||||||||| ||| || | |||| ||||||| |
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| T |
2819086 |
tcttctgcaagaaagtatttaggtctgagcttggtgg |
2819122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 15 - 170
Target Start/End: Original strand, 2759643 - 2759798
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
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|||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
2759643 |
atcaccactagaattatgcaagttgcagattttttcaagaaatcatttctagttcatgttcacaacttgcaacttttgactccaaacaaagcatgggaac |
2759742 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagctt |
170 |
Q |
| |
|
||||||||||||||| ||| |||| ||| |||| |||| ||| ||||| |||||| |
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| T |
2759743 |
tcttctgcaagaaagtatttagatatgatcttggagggcgttgtccaccggagctt |
2759798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 2838309 - 2838113
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||||||||||| | |||| |||| || ||||||||||| | ||||||||| ||||||||| |
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|
| T |
2838309 |
atcactactagaatgatgcatgttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaagcatgggaac |
2838210 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
|
||||||| ||||||| ||| |||||||| |||||||||||| |||||||||||||| | |||||| |||||| |||| ||||||||||||||| |
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|
| T |
2838209 |
tcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttaaggctgtgtcaaaagaaattgttcaaaaatgcaagcagct |
2838113 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 2855519 - 2855323
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||||||||||| | |||| |||| || ||||||||||| | ||||||||| ||||||||| |
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| T |
2855519 |
atcactactagaatgatgcatgttgcagaatttttcaagaaatcctttctaactcatattcataacctgcaacttttgcctccaaacaaagcatgggaac |
2855420 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
|
||||||| ||||||| ||| |||||||| |||||||||||| |||||||||||| | | |||||| |||||| |||| ||||||||||||||| |
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|
| T |
2855419 |
tcttctgtaagaaagtatttagatttgaacctggtgggcattgtccaccagagcttgaggctgtgtcaaaagaaattgttctaaaatgcaagcagct |
2855323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 211
Target Start/End: Original strand, 2749421 - 2749620
Alignment:
| Q |
12 |
atcatcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatggg |
111 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| |||||||||| | |||| ||||| || ||||||||||| | ||||||||| |||||| |
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| T |
2749421 |
atcatcaccactagaatgatgtatgttgcagattttttcaaaaaatcctttctaactcatattcacaacctgcaacttttgcctccaaacaaagcatggg |
2749520 |
T |
|
| Q |
112 |
aactcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
|
|||| |||||||||| || ||| |||| |||| ||||||| ||||| ||| |||| ||| | | |||||| |||||| |||| ||| |||| |||||| |
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| T |
2749521 |
aacttttctgcaagagagtatttagatatgagcttggtggacattgtccatcagaacttgaggctgtgtcaaaagaaattgttcaaaagtgcaggcagct |
2749620 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 127
Target Start/End: Original strand, 5413315 - 5413427
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||| |||||||||| ||| |||||||| || ||||||||||| | ||||||||| ||||||||| |
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| T |
5413315 |
atcaccactagaatgatgcaagttgcggattttttcaaaaaatcctttctagtatatgttcacaacctgcaacttttgcctccaaacaaagcatgggaac |
5413414 |
T |
|
| Q |
115 |
tcttctgcaagaa |
127 |
Q |
| |
|
| | ||||||||| |
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|
| T |
5413415 |
tttactgcaagaa |
5413427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0691 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0691
Description:
Target: scaffold0691; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 5861 - 5665
Alignment:
| Q |
15 |
atcaccacgagaatgatgcaagttgcagattttttcaagaaatcctttcaagttcatgttcacgacttgcaacttttgacaccaaacaaatcatgggaac |
114 |
Q |
| |
|
|||||||| |||||||||| ||||| || |||||||||||||||||| ||||||||||||| | ||||||| ||| | ||||||||| |||||||| |
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| T |
5861 |
atcaccacaagaatgatgcttgttgccgaatttttcaagaaatcctttatagttcatgttcacaaactgcaactcttgcctccaaacaaagtatgggaac |
5762 |
T |
|
| Q |
115 |
tcttctgcaagaaagcattcagatttgaggttggtgggcattgaccaccagagcttaactccatgtcaatagaaatagttcgaaaatgcaagcagct |
211 |
Q |
| |
|
|||||||||| |||| ||| |||||||| |||||||||||| |||| |||||| | | | |||| |||||| ||| ||||||||||||||| |
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|
| T |
5761 |
tcttctgcaaaaaagtatttagatttgaacctggtgggcattgtccacttgagcttgaggctgtatcaaaagaaattgttaaaaaatgcaagcagct |
5665 |
T |
|
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