View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_28 (Length: 210)
Name: NF3006_low_28
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_28 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 9947705 - 9947914
Alignment:
| Q |
1 |
ttaggatttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaaggtagatatccgaaatccaatttctttaatctt |
100 |
Q |
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| T |
9947705 |
ttaggatttaaatttgagggtggtgaccacaacaggactcctaaccacatgactcacatccatccaagttagatatccgaaatccaatttctttaatctt |
9947804 |
T |
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| Q |
101 |
gtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttga |
200 |
Q |
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| T |
9947805 |
gtcatgcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttgggataacactgacatgaaaccctttga |
9947904 |
T |
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| Q |
201 |
taggagtaat |
210 |
Q |
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|||||||||| |
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| T |
9947905 |
taggagtaat |
9947914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 25 - 197
Target Start/End: Complemental strand, 8958812 - 8958640
Alignment:
| Q |
25 |
gaccacaacaggactcctaatcacatgactcacatccatccaaggtagatatccgaaatccaatttctttaatcttgtcatgcttccaacttcattcctc |
124 |
Q |
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|||||||| ||||| |||| |||||| || ||||||||||| |||||| || ||| ||| |||||| | | ||||| | ||| | |||||| ||||| |
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| T |
8958812 |
gaccacaattggacttctaaccacatgcttcgtatccatccaagttagatacccaaaagccactttcttcatttttgtcgttcttgccacttcaatcctc |
8958713 |
T |
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| Q |
125 |
aacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctt |
197 |
Q |
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| T |
8958712 |
aacttgtagcttagtttctcattcttctcattgaataccaacttgtttgggataacactgacatggaaccctt |
8958640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 8963717 - 8963685
Alignment:
| Q |
134 |
cttagcttctcattcttctcatggaacaccaac |
166 |
Q |
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| T |
8963717 |
cttagcttctcattcttctcattgaacaccaac |
8963685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 6 - 198
Target Start/End: Original strand, 34962022 - 34962214
Alignment:
| Q |
6 |
atttaaatttgagggtggtgaccacaacaggactcctaatcacatgactcacatccatccaaggtagatatccgaaatccaatttctttaatcttgtcat |
105 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| | ||||||||| ||| ||| |||||||||| ||||||| |
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| T |
34962022 |
atttcaatttgagggtggtgaccacaataggactcctaacaacatgcttcacatccatccatgttagatatccaaaagccactttctttaattttgtcat |
34962121 |
T |
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| Q |
106 |
gcttccaacttcattcctcaacttaaatcttagcttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaacccttt |
198 |
Q |
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| T |
34962122 |
acttgcaacttcaatcctcaatttgtagcttagcttctcattcttctcattaaacaccaaattgtttgggataacagtgacacgaaacccttt |
34962214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 203
Target Start/End: Original strand, 25927943 - 25928007
Alignment:
| Q |
139 |
cttctcattcttctcatggaacaccaacttgtttaagataacactgacatgaaaccctttgatag |
203 |
Q |
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| T |
25927943 |
cttctcattcttctcattaaacactaacttgtttgggataacactaacacgaaaacctttaatag |
25928007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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