View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_3 (Length: 554)
Name: NF3006_low_3
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 66 - 365
Target Start/End: Complemental strand, 8449045 - 8448727
Alignment:
| Q |
66 |
ttgttagtaatgtattttgtgacatacatttataaatgtgaataataaaaaatgcagtccataaaatatataaaatttgtcaatttaattc--------- |
156 |
Q |
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| T |
8449045 |
ttgttagtaatgtattttgtgacatatatttataaatgtgaataataaaaaatacagtccataaaatatataaaatttgtcaatttagttcctttttgcc |
8448946 |
T |
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| Q |
157 |
-----tagttcataagcaagtataaacaacttttttaaatgaatcctccagatcttaggaaaaagttcccttgttataatctggagttcaactgaaagta |
251 |
Q |
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| T |
8448945 |
acacctagtttataagcaagtataaacaacttttttaaatgaaccctccggatcttaggaaaaagttcccttattataatctggagttcaattgaaagta |
8448846 |
T |
|
| Q |
252 |
aagtc-----tgacaaagacattgtttcactctgacattaaactcgaactctcgcaaacaaatatactataagaagttcatcaatacttgactctaatta |
346 |
Q |
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| T |
8448845 |
aagtaaagtatgataaagacattgtttcactcagacattaaactcggactctcacaaacaattatactataagaagttcattaatacttgactctaatta |
8448746 |
T |
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| Q |
347 |
cttgtttattaacctctca |
365 |
Q |
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|||| |||||| ||||||| |
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| T |
8448745 |
cttggttattagcctctca |
8448727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 470 - 547
Target Start/End: Complemental strand, 8448662 - 8448585
Alignment:
| Q |
470 |
acttcaattttgttcatcagtttcgaactgaaatctcaatctctccatagtgaagtcgaggtatatcttcttcatctc |
547 |
Q |
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| T |
8448662 |
acttcaattttgttcatcagtttcgaactaaaatctcaatctctccatagtgaagtcgaggtatatcttcttcatctc |
8448585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 321 - 441
Target Start/End: Complemental strand, 8236452 - 8236333
Alignment:
| Q |
321 |
agttcatcaatacttgactctaattacttgtttattaacctctcattttgaggataaa-ttgtcacattagtaatataaatacatcatctcattgaacga |
419 |
Q |
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| T |
8236452 |
agttcattaatacttgagcctaattacttagttataaacctcttatt--gaggataaaattgccacactagcactataaatatatcatctcatggaacca |
8236355 |
T |
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| Q |
420 |
atctcacccatctttcttatgt |
441 |
Q |
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| T |
8236354 |
atctcacccatctttcttatgt |
8236333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 8449076 - 8449026
Alignment:
| Q |
19 |
tatactccgggatattgtttaattcctttccttgttagtaatgtattttgt |
69 |
Q |
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| T |
8449076 |
tatacttcaggatattgtttaattcctttccttgttagtaatgtattttgt |
8449026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 140
Target Start/End: Complemental strand, 8237098 - 8237021
Alignment:
| Q |
64 |
ttttgttagtaatgtattttgtgacatacattt-ataaatgtgaataataaaaaatgcagtccataaaatatataaaa |
140 |
Q |
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| T |
8237098 |
ttttgttagtaatgtatcttgttacatatattttataaatgtgaataataataaatatagtccagaaaatatataaaa |
8237021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 539
Target Start/End: Complemental strand, 8236264 - 8236211
Alignment:
| Q |
486 |
tcagtttcgaactgaaatctcaatctctccatagtgaagtcgaggtatatcttc |
539 |
Q |
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| T |
8236264 |
tcagtttcgaactaaaatctcaatctctcccaagcaaagttgaggtatatcttc |
8236211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 152
Target Start/End: Complemental strand, 8243128 - 8243040
Alignment:
| Q |
65 |
tttgttagtaatgtattttgtgacatacattt-ataaatgtgaataataaaaaatgcagtccataaaatatataaaatttgtcaattta |
152 |
Q |
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| T |
8243128 |
tttgttatcaatgtatttcgtgacttatattttataaatgtgaataatagtaaatatagtctataaagtatatgaaatgtgtcaattta |
8243040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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