View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_4 (Length: 500)
Name: NF3006_low_4
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_4 |
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| [»] scaffold0250 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 36478826 - 36479324
Alignment:
| Q |
1 |
caataatctaggttacttttgctaaaagaaagagattcgaactataagttttttcatggcattacctctagtcatc---gacagggcaataatcttaatt |
97 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||| |
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| T |
36478826 |
caataatctaggctacttttgctaaaagaaagagattcgaactataagttttttcatggcattacttctagtcatcatcggcagggcaataatcttaatt |
36478925 |
T |
|
| Q |
98 |
ctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgtagtgcaattttttctcattttgcggctcattttaaggcgggtaatgttgatag |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36478926 |
ctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgtactgcaattttttctcattttgtggctcattttaaggcgggtaatgttgatag |
36479025 |
T |
|
| Q |
198 |
accacttgtggatgatcttcagtttcatactatatcgcctatggacggagtgaatttgattaagctttttagtctagaggaagggaaagttgcagtctgg |
297 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36479026 |
accacttgtggatgatcttcattttcatactatattgcctatggatggagtgaatttgattaaggattttagtctagaggaagggaaagttgcagtctgg |
36479125 |
T |
|
| Q |
298 |
gattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttggcctgaattaaaaggtgatctcatgaggttcatt |
397 |
Q |
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||||||||| ||||||||| | ||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36479126 |
gattgtgacagttttaaaaattctgggcccggatgacattaattttagttttataaaggagttttggcctgaattaaaaggtgatctcatgaggttcatt |
36479225 |
T |
|
| Q |
398 |
tcagagtttcaccgcaatataagattaacgaaaggtattaaatataccttatcttctcctttttatcatctttattcactttgtattttaatatcttgt |
496 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36479226 |
tcagagtttcaccgcaatataagattaacgaaagatattaaatgtaccttatcttctcctttttatcatctttattcactttgtattttaatatcttgt |
36479324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0250 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0250
Description:
Target: scaffold0250; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 46 - 411
Target Start/End: Complemental strand, 13577 - 13223
Alignment:
| Q |
46 |
aagttttttcatggcattacctctagtcatcgacagggcaataatcttaattctattattgttgaaggcgctcgggtggaaggagtgtctaatgtgtgta |
145 |
Q |
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||||||||||| ||||||| || |||| ||||| ||| |||||||||||| |||| |||||| || | ||||||| |||||||| || ||| ||| |
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| T |
13577 |
aagttttttcacggcattatgtcaagtcgtcgactgggtaataatcttaatcatattgatgttgatggagactgggtggagggagtgtcaaaggtgcgta |
13478 |
T |
|
| Q |
146 |
gtgcaattttttctcattttgcggctcattttaaggcgggtaatgttgatagaccacttgtggatgatcttcagtttcatactatatcgcctatggacgg |
245 |
Q |
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||| |||| |||||||||||||||||||||||| | ||||||||||||||| | ||||||||| ||||||||| | |||| | | ||||| |
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| T |
13477 |
gtgttgttttctctcattttgcggctcattttaagactctcaatgttgatagaccagtcgtggatgat------tttcatactctgtcgcatttagacgg |
13384 |
T |
|
| Q |
246 |
agtgaatttgattaagctttttagtctagaggaagggaaagttgcagtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttag |
345 |
Q |
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| T |
13383 |
ggtgaacttgattaaaccttttagcatggaagaagtaaaatctgtggtttgggattgtgacaattttaaaagttc-ggggccagatggtgtgaactttag |
13285 |
T |
|
| Q |
346 |
ttttataaaagagttttggcctgaattaaaaggtgatctcatgaggttcatttcagagtttcaccg |
411 |
Q |
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| T |
13284 |
ttttatcaaggagttttggcctg----agaagatgatgtcatgtgtttcatatcagagtttcaccg |
13223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 26133358 - 26133258
Alignment:
| Q |
127 |
ggagtgtctaatgtgtgtagtgcaattttttctcattttgcggctcattttaaggcgggtaatgttgatagaccacttgtggatgatcttcagtttcata |
226 |
Q |
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||||||||||||||| |||||| |||||| |||||| ||| | |||||||||||| ||||||||| |||| | ||||||||||| |||| |||| || |
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| T |
26133358 |
ggagtgtctaatgtgcgtagtgtcatttttgatcattt-gcgacccattttaaggcgtgtaatgttgttagatctgttgtggatgattttcattttcgta |
26133260 |
T |
|
| Q |
227 |
ct |
228 |
Q |
| |
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|| |
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| T |
26133259 |
ct |
26133258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 414
Target Start/End: Complemental strand, 32643753 - 32643684
Alignment:
| Q |
345 |
gttttataaaagagttttggcctgaattaaaaggtgatctcatgaggttcatttcagagtttcaccgcaa |
414 |
Q |
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| T |
32643753 |
gttttattaaagatttttggtttgaattgaaacatgacattatgaggttcatttcagagtttcaccgcaa |
32643684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 364
Target Start/End: Complemental strand, 8718169 - 8718098
Alignment:
| Q |
292 |
gtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttgg |
364 |
Q |
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| T |
8718169 |
gtctgggattgcgatagttttaaaagtcct-ggtccggatggcgttaattttagtttcataaaggagttttgg |
8718098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 305
Target Start/End: Original strand, 32465866 - 32465967
Alignment:
| Q |
204 |
tgtggatgatcttcagtttcatactatatcgcctatggacggagtgaatttgattaagctttttagtctagaggaagggaaagttgcagtctgggattgt |
303 |
Q |
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||||||| |||||||||||| ||| | | | |||||| || |||||||||||||| | |||| || | ||||| ||||||| |||||| ||||||||| |
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| T |
32465866 |
tgtggataatcttcagtttcgtacattgactcttatggaaggggtgaatttgattaaaccttttcgtatggaggatgggaaagctgcagtttgggattgt |
32465965 |
T |
|
| Q |
304 |
ga |
305 |
Q |
| |
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|| |
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| T |
32465966 |
ga |
32465967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 3128201 - 3128273
Alignment:
| Q |
292 |
gtctgggattgtgacggttttaaaagtcctgggtccggatgacattaactttagttttataaaagagttttggc |
365 |
Q |
| |
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|||||||||||||| ||||||||||||| || ||||||| |||| |||||||||||||| |||||||||| |
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| T |
3128201 |
gtctgggattgtgatagttttaaaagtccaggc-ccggatggtgttaattttagttttataaaggagttttggc |
3128273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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