View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3006_low_6 (Length: 475)
Name: NF3006_low_6
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 89 - 463
Target Start/End: Original strand, 17513299 - 17513676
Alignment:
| Q |
89 |
cctgaaacgctacaacgcataaacgcagtttctttaactattactagaaacataacactaaaatcgcaaaaaagtagtagctgacactcataaatgccga |
188 |
Q |
| |
|
|||||||| || |||| ||||||||||||||||||||||||||| || |||| |||||||||||||||||||||| |||||||| | |||||||||| | |
|
|
| T |
17513299 |
cctgaaacactgcaacacataaacgcagtttctttaactattaccagcaacacaacactaaaatcgcaaaaaagtggtagctgaaatgcataaatgccaa |
17513398 |
T |
|
| Q |
189 |
aacgcaatactataaatgcataaacgcatactgcagtacatatcaaataaattcaagatcgaaaccaatagtacataacaattttcc--cgtatataata |
286 |
Q |
| |
|
||| |||||||||||||||||||||||||| ||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17513399 |
aacacaatactataaatgcataaacgcatattgcagtacacgtcagataa-ttcaagatcggaaccaatagtacataacaattttcctccgtatataata |
17513497 |
T |
|
| Q |
287 |
at--aaaataacaaaatacttgttcaaaatacaaaatcaaggtatattttttagcatatctccaaaacatgtttaatgtcggcatgaaattacaaaaaag |
384 |
Q |
| |
|
|| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
17513498 |
atcgaagataaaaaaatacttgttcaaaatacaaaatcaaggtatattttttagcgtatctccaaaacatgtttaatgtcgacatgaaattacaaaaaaa |
17513597 |
T |
|
| Q |
385 |
cttaatttcttcaaatgtagatcaccgatcaatcaaggttagaatatgctccaatatttgtatcgtcaaagggtgccta |
463 |
Q |
| |
|
||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17513598 |
cttcatttcttccaatgtagatcaccggtcaatcaaggtaagaatatgctccaatatttgtatcgtcaaagggtgccta |
17513676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 28 - 354
Target Start/End: Original strand, 8152896 - 8153225
Alignment:
| Q |
28 |
tgaaacacagcaacacattaatgcagaaacgcaatttctaccagaaaagcaagtnnnnnnncctgaaacgctacaacgcataaacgcagtttctttaact |
127 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
8152896 |
tgaaacgctgcaacacattaatgcagaaacgcaatttctaccagaaacgcaagtaaaaaaacctgaaacgctgcaacgcataaacgtagtttctttaact |
8152995 |
T |
|
| Q |
128 |
attactagaaacataacactaaaatcgcaaaaaagtagtagctgacactcataaatgccgaaacgcaatactataaatgcataaacgcatactgcagtac |
227 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8152996 |
attactagaaacacaacactaaaatcgcaaaaaagtagtagctgaaatgcataaataccgaaacgcaatactataaatgcataaacgcatactgcagtac |
8153095 |
T |
|
| Q |
228 |
atatcaaataaattcaagatcgaaaccaatagtacataacaattttc--ccgtatataataat--aaaataacaaaatacttgttcaaaatacaaaatca |
323 |
Q |
| |
|
| |||| || ||||||||||| ||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
8153096 |
acatcagat-gattcaagatcggaaccaatagtaaataacaattttcctccgtatataataatcgaagataacaaaatacttgttcaaaatacaaaatca |
8153194 |
T |
|
| Q |
324 |
aggtatattttttagcatatctccaaaacat |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8153195 |
aggtatattttttagcatatctccaaaacat |
8153225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 142 - 354
Target Start/End: Original strand, 8109150 - 8109365
Alignment:
| Q |
142 |
aacactaaaatcgcaaaaaagtagtagctgacactcataaatgccgaaacgcaatactataaatgcataaacgcatactgcagtacatatcaaataaatt |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
|
|
| T |
8109150 |
aacactaaaatcgcaaaaaagtagtagctgaaatgcataaatgccgaaacgcaatactataaatgcataaacgcatactgcagtacacatcagat-aatt |
8109248 |
T |
|
| Q |
242 |
caagatcgaaaccaatagtacataacaattttc--ccgtatataataat--aaaataacaaaatacttgttcaaaatacaaaatcaaggtatatttttta |
337 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8109249 |
caagatcggaaccaataatacataacaattttcctccgtatataataatcgaagataacaaaatacttgttcaaaatacaaaatcaaggtatatttttta |
8109348 |
T |
|
| Q |
338 |
gcatatctccaaaacat |
354 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
8109349 |
gcatatctccaaaacat |
8109365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University