View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3006_low_8 (Length: 421)
Name: NF3006_low_8
Description: NF3006
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3006_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 130 - 404
Target Start/End: Complemental strand, 16955445 - 16955175
Alignment:
| Q |
130 |
accaccctcagcctgatccacggacttgggcgatccattcaactgaaactacagcgaaattaatataacaggtgtcaataacccaaatttaaaaaagtaa |
229 |
Q |
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| T |
16955445 |
accaccctcagcctgatccacggacttgggcgatccattcaactgaaactacagagaaattaatataacaggtgtcaataacccaaatttaaaaaagtaa |
16955346 |
T |
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| Q |
230 |
aatcctaaattttacgaagaaaacacataaacgacttagataggtttaattagagacgatgactccaaacttgaaaccctaattaataatcagcatcatg |
329 |
Q |
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| T |
16955345 |
aatcctaaattttacgaagaaaacacataaacgacttagataggtttaattagagacgatgactccaaacttgaaaccctaattaataatcagcatcatg |
16955246 |
T |
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| Q |
330 |
cacaaattaaacttgttttaaaaaataaacatgcatatgtatgtacctgtaggtggcggataacattggagaatg |
404 |
Q |
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| T |
16955245 |
cacaaattaaacttgttttcaaaaataaacatgcata----tgtacctgtaggtggcggataacattggagaatg |
16955175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 11 - 109
Target Start/End: Complemental strand, 16955567 - 16955469
Alignment:
| Q |
11 |
catcatcaatatcgtcacgcacaattatcactggccaatacacattcaacacaattttaaaccggtttgtttgttaccttagcatcagtagaatcagca |
109 |
Q |
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| T |
16955567 |
catcatcaatatcgtcacgcacaattatcactggccaatacacattcaacacaattttaaaccggtttgtttgttaccttagcatcagtagaatcagca |
16955469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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