View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3007_low_1 (Length: 340)
Name: NF3007_low_1
Description: NF3007
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3007_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 20 - 333
Target Start/End: Complemental strand, 7875185 - 7874872
Alignment:
| Q |
20 |
taatggaggtgattgaagcatccaacaacataaaatcttctgtatgtctacttggatcaggaatggtgacaccattatttttgcaccactttgatattaa |
119 |
Q |
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| T |
7875185 |
taatggaggtgattgaagcatccaacaacataaaatcttctgtatgtctacttggatcaggaatggtgacaccattatttttgcaccactttgatatcaa |
7875086 |
T |
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| Q |
120 |
gtctttcatgacaatatttggagtcaatgtcatatgaggcagttccttttctgtttttggacatatagttttaccctcattaatccactttcttatccac |
219 |
Q |
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| T |
7875085 |
gtctttcatgacaatatttggagtcaatgtcatatgaggcagttccttttctgtttttggacatatagttttaccctcattaatccactttcttatccac |
7874986 |
T |
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| Q |
220 |
attctttcatatgttactccagaagcaatgataacaggatcatacatcagccttgaggatattggacacttgtattcctcaggtggtgccactctatctg |
319 |
Q |
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| T |
7874985 |
attctttcatatgttactccagaagcaatgataacaggatcatgcatcagccttgaggatattggacacttgtattcctcaggtggtgccactctatctg |
7874886 |
T |
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| Q |
320 |
actgattcatctca |
333 |
Q |
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| T |
7874885 |
actgattcatctca |
7874872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 273
Target Start/End: Original strand, 32838122 - 32838328
Alignment:
| Q |
67 |
ctacttggatcaggaatggtgacaccattatttttgcaccactttgatattaagtctttcatgacaatatttggagtcaatgtcatatgaggcagttcct |
166 |
Q |
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| T |
32838122 |
ctacttggattaggaatggagacgtcattagttttgcaccattttgatattaattcctttaaagcaacgttaggagtcatcgccaaatgcagcagtttct |
32838221 |
T |
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| Q |
167 |
tttctgtttttggacatatagttttaccctcattaatccactttcttatccacattctttcatatgttactccagaagcaatgataacaggatcatacat |
266 |
Q |
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| T |
32838222 |
ttttagttttcgggcatataacattaccctcatcaaaccatttttgtatccacatccgctcgtatgtttctcctgaagcaatgacaacaggatcatacat |
32838321 |
T |
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| Q |
267 |
cagcctt |
273 |
Q |
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|| |||| |
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| T |
32838322 |
caacctt |
32838328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Original strand, 34511494 - 34511536
Alignment:
| Q |
224 |
tttcatatgttactccagaagcaatgataacaggatcatacat |
266 |
Q |
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| T |
34511494 |
tttcatatgtttgcccagaagcaatgataacaggatcatacat |
34511536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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