View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3008_low_1 (Length: 430)
Name: NF3008_low_1
Description: NF3008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3008_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 417
Target Start/End: Original strand, 5591523 - 5591920
Alignment:
| Q |
16 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttcatgtagattat |
115 |
Q |
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| T |
5591523 |
cagacagatgcttgaaattaatgaaacccaatcattagttaatcattcagttcctaatcaaataattaccttcgtccttatcacacttaatgtagattat |
5591622 |
T |
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| Q |
116 |
ttactgtacaaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
215 |
Q |
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| T |
5591623 |
ttactgtataaatatatgggataatatcatcagatacacacttatatatagttatcgaataatttatttaacacaaatcaaatcaagcttaaggtggtat |
5591722 |
T |
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| Q |
216 |
aaccaattaaacttgttacatttattccagtttacaatattgctgtttgatatgaaaagattgcttcaaatgtcggtaggaaaaagaaacaatccatata |
315 |
Q |
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| T |
5591723 |
aaccaattaaacttgttacatttattccagtttacaatattgctgtttgatatgaaaagattgcttcaaatgtcggtaggaaaaagaaacaatccatata |
5591822 |
T |
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| Q |
316 |
ttattgtaacagcatatatatgagtagggccgatttatataaaagctattaagctccatgtgaatgctaataacttgaacatatttaactcgaggaacta |
415 |
Q |
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| T |
5591823 |
ttattgtaacagc----atatgagtagggccgatttatataaaagctattaagctccatgtgaatgctaataacttgaacatatttaactcgaggaacta |
5591918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 237 - 417
Target Start/End: Original strand, 5585502 - 5585682
Alignment:
| Q |
237 |
ttattccagtttacaatattgctgtttgatatgaaaagattgcttcaaatgtcggtaggaaaaagaaacaatccatatattattgtaacagcatatatat |
336 |
Q |
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| T |
5585502 |
ttatttcagttaacaataatgctatttgataagaaaagattgtttcaaatgtaggtaggaaaa-gaaacaatccatacaatattgtaacagcatat---- |
5585596 |
T |
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| Q |
337 |
gagtagggccgatttatataaaagctattaagctccatgtgaatgc-----taataacttgaacatatttaactcgaggaactaag |
417 |
Q |
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| T |
5585597 |
gagtagggcctaattatgtaaaagctatttagctcaatgtgaatgaatgcataataacttgaacctatttaactagaggcactaag |
5585682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 299
Target Start/End: Original strand, 5581493 - 5581608
Alignment:
| Q |
185 |
aacacaaatcaaatcaagcttaaggtggtataaccaattaaacttgttaca-tttattccagtttacaatattgctgtttgatatgaaaagattgcttca |
283 |
Q |
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| T |
5581493 |
aacacaaatcaaatcaaacttaaggcgagagaaccaattacactaatttgattttattctagtttataataatgctatttgatatgaaaagattgcttca |
5581592 |
T |
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| Q |
284 |
aatgtcggtaggaaaa |
299 |
Q |
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| T |
5581593 |
aatgtaggtaggaaaa |
5581608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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