View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3008_low_2 (Length: 295)
Name: NF3008_low_2
Description: NF3008
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3008_low_2 |
 | |
|
| [»] scaffold2079 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 6333736 - 6333448
Alignment:
| Q |
1 |
caaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaactctgtttttccatataagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333736 |
caaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaactctgtttttccatataagtg |
6333637 |
T |
|
| Q |
101 |
nnnnnnnnnnagtcaattgaagttcaatactagtaaaatattcctaacatttactttcttgaattcattcaaccatttctagattgaaagaagtgggaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333636 |
ttttttttt-agtcaattgaagttcaatactagtaaaatattcctaacatttactttcttgaattcattcaaccatttctagattgaaagaagtgggaaa |
6333538 |
T |
|
| Q |
201 |
attatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctcaagctgatatcaa |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6333537 |
attatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctcaagctgatatcaa |
6333448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 6326256 - 6325966
Alignment:
| Q |
1 |
caaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaactctgtttttccatataagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||||| | ||||||||||| | ||||||||||||| |||||||||||| ||| |
|
|
| T |
6326256 |
caaggtaaataacttcaattttcaa-----tcactactcaaacattaacttactctgtttccccttttttttagtagaaccctgtttttccattcaag-- |
6326164 |
T |
|
| Q |
101 |
nnnnnnnnnnagtcaattgaagttcaatactagtaaaatattcctaacatttact---ttcttgaattcattcaaccatttctagattgaaagaagtggg |
197 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6326163 |
atttttttttagtcaattgaagttcaatactagtataatattcctaacatttactattttcttgaattcattcaaccatttctagattgaaagaagtggg |
6326064 |
T |
|
| Q |
198 |
aaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctcaagctgatatcaaaacaa |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6326063 |
aaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaatgaacacaagtaagggaaagtctcaagctgatatcaaaacaa |
6325966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 155 - 277
Target Start/End: Original strand, 6242589 - 6242711
Alignment:
| Q |
155 |
tttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcgaaaat |
254 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
6242589 |
tttcttgaattcattcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagctattgtttgcaatcgtcgggtttgcagcaat |
6242688 |
T |
|
| Q |
255 |
gaacacaagtaagggaaagtctc |
277 |
Q |
| |
|
||| ||||| || ||||| |||| |
|
|
| T |
6242689 |
gaatacaagcaacggaaaatctc |
6242711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 265
Target Start/End: Complemental strand, 6346690 - 6346575
Alignment:
| Q |
150 |
tttactttcttgaattcattcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgcg |
249 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||| ||||| ||||| |||||| |||| |||||||||| ||||||||||| ||||| || |||||||| |
|
|
| T |
6346690 |
tttattttcttgaatttattcaaccctttctagcttgaatgaagttggaaaactattaagccaattttttgagctattgttcgcaataattgggtttgca |
6346591 |
T |
|
| Q |
250 |
aaaatgaacacaagta |
265 |
Q |
| |
|
| || ||| ||||||| |
|
|
| T |
6346590 |
acaacgaatacaagta |
6346575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 167 - 248
Target Start/End: Original strand, 827 - 908
Alignment:
| Q |
167 |
attcaaccatttctagattgaaagaagtgggaaaattatttggccaatttttcgagctattgtttgcaatcatcgggtttgc |
248 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||||||| |||||||||| |
|
|
| T |
827 |
attcaaccctttctagattgaatgaagttggagaattatttggccaatttttcaagcaattgtttgcaatcgtcgggtttgc |
908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University