View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_high_5 (Length: 410)
Name: NF3009_high_5
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 167 - 401
Target Start/End: Complemental strand, 30018677 - 30018443
Alignment:
| Q |
167 |
gaatatcaaaataacttttttaccagttttcaataggtgagatatttcagtaatacctatttcattttgtgttgcttgtaatctactttccaatgtagct |
266 |
Q |
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| T |
30018677 |
gaatatcaaaatcacttttttaccagttttcaataggtgagatatttcagtaatacctatttcattttgtgttgcttgtaatctactttccaatgtagct |
30018578 |
T |
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| Q |
267 |
aagtttgctttggctttttcagcttcttcttgtgcttcaagaagttgagctttagcagtttgagctagtgatttagcttcatcagcttcttgtgctgctg |
366 |
Q |
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| T |
30018577 |
aagtttgctttggctttttcagcttcttcttgtgcttcaagaagttgagctttagcagtttgagctagtgatttagcttcatcagcttcttgtgctgctg |
30018478 |
T |
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| Q |
367 |
cttgaagtttcttaggtaactcagccataatctct |
401 |
Q |
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| T |
30018477 |
cttgaagtttcttaggtaactcagccataatctct |
30018443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 30018838 - 30018741
Alignment:
| Q |
1 |
ctccaatgctttgattgaatctttagccaatttttcagaaactttagcagctcctgttattagagataaagttagtcaagaattagagcccatttgtg |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30018838 |
ctccaatgctttgattgaatctttagccaatttttcagaaactttagcagctcctgttattagagataaagttagtcaagaattagagcccatttgtg |
30018741 |
T |
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