View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_high_9 (Length: 311)
Name: NF3009_high_9
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 30077980 - 30077685
Alignment:
| Q |
1 |
actgttttaggacagaacaccacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatc |
100 |
Q |
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| T |
30077980 |
actgttttaggacagaacaccacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatc |
30077881 |
T |
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| Q |
101 |
tatgttgtcttgattcatggttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077880 |
tatgttgtcttgattcatggttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgt |
30077781 |
T |
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| Q |
201 |
tccgctttcgcagtatgctgctgatcggagacggaggaggtgaattttctttttcctcgattagtataatttggagtttgattgcgagataaatat |
296 |
Q |
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| T |
30077780 |
tccgctttcgcagtatgctgctgatcggagacggaggaggtgaattttctttttcctcgattaggataatttggagtttgattgcgagataaatat |
30077685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 30084356 - 30084255
Alignment:
| Q |
49 |
aaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatctatgttgtcttgattcatggttgaagcttaatggctcttgtcccgttt |
148 |
Q |
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||||| |||||||| ||||||||||||| |||||| || || ||||||| | |||| ||||| ||||||||||| ||||||| || ||||| |||| |
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| T |
30084356 |
aaggaatcggagattttgaggatgatgccgcaatgtcaccactattttcatcgagattgtgttgatacatggttgaaggttaatggttcgtgtccagttt |
30084257 |
T |
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| Q |
149 |
gt |
150 |
Q |
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|| |
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| T |
30084256 |
gt |
30084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 10810351 - 10810163
Alignment:
| Q |
21 |
cacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatctatgttgtcttgattcatgg |
120 |
Q |
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||||||||| || |||||||||||||||||||||||||||||| | ||||||||||| |||||| | || || ||||| ||||||||||||||||| ||| |
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| T |
10810351 |
cacgtgttcgatctgtttgtgtgagtacaaggattcggagatgttaaggatgatgccggaatgtagacactattttcacctatgttgtcttgattcgtgg |
10810252 |
T |
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| Q |
121 |
ttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgttccgctttc |
209 |
Q |
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||||| ||||| || ||||||||||||||||| ||||| || | || |||||| | ||||||||| | ||||| |||||||| ||||| |
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| T |
10810251 |
ttgaaacttaacggttcttgtcccgtttgtcggaactcacctatgccaacgccgttatctactccgttacaagaagttgttccactttc |
10810163 |
T |
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