View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_1 (Length: 651)
Name: NF3009_low_1
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 10 - 637
Target Start/End: Complemental strand, 16266968 - 16266313
Alignment:
| Q |
10 |
aaatgaataaatcaatgatggagaaacttacatgcgaagactgaaactaggacggcaaatatatataaagagtttgagtaagagatgcacttcgccatta |
109 |
Q |
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| T |
16266968 |
aaatgaataaatcaatgatggagaaacttacatgcgaagactgaaactaggacggcaaatatatataaagagtttgagtatgagatgcacttcgccatta |
16266869 |
T |
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| Q |
110 |
gaatatatttgtttgtcaaatttctttggatttgttactccaatgtattttttgttgtttatagtgaatcaaaagctaggtatttataaggttttaggtt |
209 |
Q |
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| T |
16266868 |
gacaatatttctttgtcaaatttctttggatttgttactccaatgtattttttgttgtttctagtgaatcaaaagctaggtatttataaggttttaggtt |
16266769 |
T |
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| Q |
210 |
aacttaacatagagaatcaaattagtagttttgtacagaaagttttttatggaaagttttt----------------------agcactagaatgaaatg |
287 |
Q |
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| T |
16266768 |
aacttaacatagagaatcaaattagtagttttgtacagaaagttttttatggaaagtttttattatatattatgtcctctgatagaactagaatgaaatg |
16266669 |
T |
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| Q |
288 |
gtaagaattttttgtcaattaaataagagggtttgagatcaaatacaaaatttatgaatgctagtaatgttaaatctcttgttcaaatacaaatttgtgc |
387 |
Q |
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| T |
16266668 |
gtaagaattttttgtcaattaaataagagggtttgagatcaaatacaaa-tttatgaatgctagtaatgttaaatctcttgttcaaatacaaatttgtgc |
16266570 |
T |
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| Q |
388 |
gcaggcgatattcgattcacagtcgagagctactagttaacacattgactaaggatctagttcgacaacaataatatcgtttactcaaacacttttacta |
487 |
Q |
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| T |
16266569 |
gtaggggatattcgactcacagtcgagagctactgattaacacattggctaaggatctagttcgacaacaataatatcgtttactcaaacacttttacta |
16266470 |
T |
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| Q |
488 |
attgtagaatttgtgggataattagaaggag----taaaaatcaatagttaatagtatatatttgggggataatgtgttgatattctaaaataacaaata |
583 |
Q |
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| T |
16266469 |
attgtagaattcgtgcaataattagaaggagtaattaaaaatcaataattaatagtatatatttgggggataatgcgttgatattctaaaataacaaata |
16266370 |
T |
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| Q |
584 |
tttaagacactaataaagttcaaacgtgactcttttt---agatgagtagagtattt |
637 |
Q |
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| T |
16266369 |
tttaagatactaacaaagttcaaacgtgactctttttatgagacgagtagagtattt |
16266313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 16258867 - 16258814
Alignment:
| Q |
99 |
cttcgccattagaatatatttgtttgtcaaatttctttggatttgttactccaa |
152 |
Q |
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| T |
16258867 |
cttcgccattagacaatatttcttcgtcaagtttctttggttttgttactccaa |
16258814 |
T |
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