View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_10 (Length: 347)
Name: NF3009_low_10
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 5655382 - 5655051
Alignment:
| Q |
1 |
ccactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaa |
100 |
Q |
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| T |
5655382 |
ccactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaa |
5655283 |
T |
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| Q |
101 |
tatgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagcaccacttgtacattcccctggtgcagcacttggatttgatgacagtaaggaac |
200 |
Q |
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| T |
5655282 |
tatgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagcaccacttgtacattcccctggtgctgcacttggatttgatgacagtaaggaac |
5655183 |
T |
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| Q |
201 |
tattctccatgggaaggattgattctccgtggcagaatcgatcggcaacaaaagaaaatcacatcaatgtgaataataacaatctagcatttgattttga |
300 |
Q |
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| T |
5655182 |
tattctccatgggaaggattgattctccgtggcagaatcgatcggcaacaaaagaaaatcacatcaatgtgaataataacaatctagcatttgattttga |
5655083 |
T |
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| Q |
301 |
tgaagagtctgaagctgacttatttgaaattg |
332 |
Q |
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| T |
5655082 |
tgaagagtctgaagctgacttatttgaaattg |
5655051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 47049113 - 47049268
Alignment:
| Q |
2 |
cactgtcaatcagaggaattcagcactccattatgtccaactttggctgcaaatatagacattatggttttagttaattttggacaaattgcattcaaat |
101 |
Q |
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|||||||| |||| ||||| ||||||||||| | |||||| || ||||| ||||||||||||||||| || || ||||||||||||| |||||| |||| |
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| T |
47049113 |
cactgtcagacagaagaatttagcactccattgtatccaacattagctgctaatatagacattatggtattggtcaattttggacaaaatgcatttaaat |
47049212 |
T |
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| Q |
102 |
atgctcctgcaaatgcacaaagaacaccaaatccatgcttcatagcaccacttgta |
157 |
Q |
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|||| || |||||||| ||||||||||||||||||||| | || ||||||||||| |
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| T |
47049213 |
atgcaccagcaaatgctcaaagaacaccaaatccatgccttgtatcaccacttgta |
47049268 |
T |
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