View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_11 (Length: 317)
Name: NF3009_low_11
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 20149291 - 20149006
Alignment:
| Q |
20 |
tattctgatatttgttggcgaaaaccataattttttactttggtatttctccataattttttaaaaagtttattagtcaggtcataggcatatgcttacc |
119 |
Q |
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| T |
20149291 |
tattctgatatttgttggcgaaaaccataattttttactttggtatttctccataattttttaaaaagtttattagtcaggtcataggcatatgcttacc |
20149192 |
T |
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| Q |
120 |
ctaaacatcatatggtcaatcttatcagttgaatcaattatcaaatg-nnnnnnngttaaatggaacgaaaatgaaagtttcaatcaggtattaggttag |
218 |
Q |
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| T |
20149191 |
ctaaacatcatatggtcaatcttatcagttgaatcaattatcaaatgaaaaaaaagttaaatggaacgaaaatgaaagtttcaatcaggtattaggttag |
20149092 |
T |
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| Q |
219 |
agaaagtaacatttaaaatagttttacagtagctaataagatatctacatagtacatacctaagcaagttgaaggccacaactctc |
304 |
Q |
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| T |
20149091 |
agaaagtaacatttaaaatagttttacagtagctaataagatatctacatagtacatacctaagcaagttgaaggccacaactctc |
20149006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 218
Target Start/End: Complemental strand, 16675310 - 16675168
Alignment:
| Q |
77 |
tttttaaaaagtttattagtcaggtcataggcatatgcttaccctaaacatcatatggtcaatcttatcagttgaatcaattatcaaatg---nnnnnnn |
173 |
Q |
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| T |
16675310 |
tttttacaaagtttagtagtcaggccatagccatatgcatgccctaaacatcatatggtcaatctta--ggttgaatcaattatcaaaagaaaaaaagaa |
16675213 |
T |
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| Q |
174 |
gttaaatggaacgaaaatgaaagtttcaatcaggtattaggttag |
218 |
Q |
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| T |
16675212 |
gttaaagggaactaaaatgaaagtttcaatcaggtattaggttag |
16675168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 222
Target Start/End: Original strand, 17743164 - 17743312
Alignment:
| Q |
77 |
tttttaaaaagtttattagtcaggtcataggcatatgcttaccctaaacatcatatggtcaatcttatcagttgaatcaattatcaaatg-----nnnnn |
171 |
Q |
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||||||||||||||| |||||||| ||||| ||||||| | |||||||||||||||||||||||||| |||||||||||| |||||| | |
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| T |
17743164 |
tttttaaaaagtttagtagtcaggccatagccatatgcatgccctaaacatcatatggtcaatctta--agttgaatcaatcatcaaaagaaaaaaaaaa |
17743261 |
T |
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| Q |
172 |
nngttaaatggaacgaaaatgaaagtttcaatcaggtattaggttagagaa |
222 |
Q |
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| T |
17743262 |
agtttaaagggaactaaaatgaaagtttcaatcagttattaggttagagaa |
17743312 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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