View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_14 (Length: 296)
Name: NF3009_low_14
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 37 - 280
Target Start/End: Complemental strand, 7222527 - 7222284
Alignment:
| Q |
37 |
gatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactcagctcttatcctattcttccttacacaatctaattaatccat |
136 |
Q |
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| T |
7222527 |
gatggtaaaaatgcttaaactgtcacgctagcatgcaacccatgcaatctctgaactcagctcttatcctattcttccttacacaatctaattaatccat |
7222428 |
T |
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| Q |
137 |
agtaccacctagctagctagctagctagtgagttgtagcataaatataacttgcagtttgattgcaataacgctcaaaaaagaagaaaattaagaacaag |
236 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222427 |
agtaccacctagctagctagctagctagggagttgtagcataaatataacttgcagtttgattgcaataacgctcaaaaaagaagaaaattaagaacaag |
7222328 |
T |
|
| Q |
237 |
ctattaaagtacaccaactttgttacgtaatatatatacttatt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7222327 |
ctattaaagtacaccaactttgttacgtaatatatatacttatt |
7222284 |
T |
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