View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_15 (Length: 275)
Name: NF3009_low_15
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 145 - 238
Target Start/End: Complemental strand, 47724026 - 47723933
Alignment:
| Q |
145 |
atctcttttcttaaaacatcatcaactaatcacatttatcatattattctcttgtatctttctctttcaaagtatatacacatatttttgaaca |
238 |
Q |
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| T |
47724026 |
atctcttttcttaaaacatcatcaactaatcacatttttcatattactctcttgtatttttctctctcaaagtgtatacacatatttttgaaca |
47723933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 40277427 - 40277307
Alignment:
| Q |
13 |
agagataatgagttagattgagtgtagatagactatgttatggtttgatgtgatgatgtaatctaatggatgaagaaagtggtctaagatggaccaatat |
112 |
Q |
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| T |
40277427 |
agagatgatgagttagattgagtgtggatagactatgatatagtttggtgtgataatctaatcaaatggttgaaaaaagtggtccaatatggaccaatat |
40277328 |
T |
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| Q |
113 |
ttttgcaggtccattttatac |
133 |
Q |
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| T |
40277327 |
ttttagagatccattttatac |
40277307 |
T |
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Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 34456262 - 34456143
Alignment:
| Q |
13 |
agagataatgagttagattgagtgtagatagactatgttatggtttgatgtgatgatgtaatctaatggatgaagaaagtggtctaagatggaccaatat |
112 |
Q |
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| T |
34456262 |
agagatgatgagttagattgagtgtggatagactatgatatagcttggtgtgataatctaatcaaatggttgaaaaaagtggtccaacatggaccaatat |
34456163 |
T |
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| Q |
113 |
ttttgcaggtccattttata |
132 |
Q |
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| T |
34456162 |
ttttagaggtccattttata |
34456143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 54431561 - 54431511
Alignment:
| Q |
88 |
aaagtggtctaagatggaccaatatttttgcaggtccattttatacggaac |
138 |
Q |
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| T |
54431561 |
aaagtggtctaacatggaccgatattttgacaggtccattttatactgaac |
54431511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 50601628 - 50601583
Alignment:
| Q |
88 |
aaagtggtctaagatggaccaatatttttgcaggtccattttatac |
133 |
Q |
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| T |
50601628 |
aaagtggtctaacatggaccgatattttgacaggtccattttatac |
50601583 |
T |
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