View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_20 (Length: 206)
Name: NF3009_low_20
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 189
Target Start/End: Complemental strand, 2059395 - 2059208
Alignment:
| Q |
2 |
taattaggaaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgcaagtcattgtcattctcagtaattaggaaatcaaacattt |
101 |
Q |
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| T |
2059395 |
taattaggaaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgcaagtcattgtcattctcagtaattaggaaatcaaacattt |
2059296 |
T |
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| Q |
102 |
gaaacatatagaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatat |
189 |
Q |
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| T |
2059295 |
gaaacatatagaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatat |
2059208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 2063197 - 2063022
Alignment:
| Q |
10 |
aaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgcaagtcattgtcattctcagtaattaggaaatcaaacatttgaaacata |
109 |
Q |
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| T |
2063197 |
aaactaaacacaaaccaaagctgcttttcggtttcaaggtagttttagttgcaagtcattgcaattctcaa-----aggaaatcaaacatttgaaacata |
2063103 |
T |
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| Q |
110 |
tag-aaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatat |
189 |
Q |
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| T |
2063102 |
taggaaactaagaaaagtcttgacgtctaaccacgaagatagatagcccggtttgcttgagcattaacttcagtgttatat |
2063022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 186
Target Start/End: Complemental strand, 2055206 - 2055037
Alignment:
| Q |
10 |
aaactaaacacaaaccaaatatgttttttggtttcaaagtagttttagttgcaagtcattgtcattctcagtaattaggaaatcaaacatttgaaacata |
109 |
Q |
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|||| ||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2055206 |
aaaccaaacacaaagcaaagatgcttttcggtttcaaagtagttttagttgcaagtcattgcaattctcagtaattaggaaatcaaacatttgaaacata |
2055107 |
T |
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| Q |
110 |
ta-gaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgtta |
186 |
Q |
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| T |
2055106 |
taggaaactaagaaaa--------gtctaacctcgaagattgatagcccggtttgcttgagcatcagctccagtgtta |
2055037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 2059425 - 2059385
Alignment:
| Q |
51 |
gttttagttgcaagtcattgtcattctcagtaattaggaaa |
91 |
Q |
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| T |
2059425 |
gttttagttgcaagtcattgtcattctcagtaattaggaaa |
2059385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 189
Target Start/End: Complemental strand, 2107305 - 2107211
Alignment:
| Q |
95 |
aacatttgaaacatatagaaattaagaaaagtcttaaggtctaacctcgaagataggtagccacgtttgcttgagcattagcttcagcgttatat |
189 |
Q |
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|||||||| ||| ||||| | |||||||||||||||||||||||||| |||| || | ||| |||||||| |||| |||||||||||||||| |
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| T |
2107305 |
aacatttgtaacctatagggactaagaaaagtcttaaggtctaacctccaagaaagatggcccgatttgcttgtgcatcagcttcagcgttatat |
2107211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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