View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3009_low_21 (Length: 204)
Name: NF3009_low_21
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 25245721 - 25245888
Alignment:
| Q |
8 |
gagatgcttaatcctatatccgtctatggattgtgtttcccatccaattggcaatatttgccttatgaaggtcttgtaagtgtcagaaggtaacctatgg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25245721 |
gagatgcttaatcctatatccgtctatggtttgtgtttcccatccaattggcaatatttgctttatgaaggtcttgtaagtgtcagaaggtaacctatgg |
25245820 |
T |
|
| Q |
108 |
ttgttaataagtgtcaggttgtctagtactactacctattcttgtaatacacccaaggtcagtactat |
175 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25245821 |
ttgttaataagtgtcaggttgtctagtactactacctattcttgtaatacacccaaggtcagtactat |
25245888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University