View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3009_low_3 (Length: 533)

Name: NF3009_low_3
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3009_low_3
NF3009_low_3
[»] chr4 (1 HSPs)
chr4 (9-513)||(4482796-4483297)
[»] chr1 (1 HSPs)
chr1 (91-123)||(42796311-42796343)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 9 - 513
Target Start/End: Original strand, 4482796 - 4483297
Alignment:
Q  9 agcagcacagatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg 108  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4482796 agcaccacaaatagcacccaaacattgcataattatgtagaacaatgtccttgttagagatagcttgcgtgccaagaaaagtccaaatgtcactgctggg 4482895  T
Q  109 ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttttattaaacacttagaaaagtgaagggtgattactctac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||    
T  4482896 ttaatgtgaccacctgcattaggtaatagacacatgatatgttagcaaaagtctaaggtttt-attaaacactttgaaaagtgaagcgtgattactctac 4482994  T
Q  209 tcggaattaattttagtagctgcatcgcgcaggagtccaaaccttttgcaggcggggaaacacacatttgacacagtcacacaatttggattgttagatc 308  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4482995 tcggaattaattttagttgctgcctcgggcaggagtccaaaccttttgcaggcggggaaacacacatttgacacagtcacacaatttggactgttagatc 4483094  T
Q  309 aagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtccaatctttaacaaacaaaatgaaggatttaatatacttt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4483095 aagattgacaagtccgagtcttaacattggtaagatgagataaagtcggacatttgcagtccaatctttaacaaacaaaatgaagaatttaatatacttt 4483194  T
Q  409 aggacttac-nnnnnnnnnnnnaatgactaaattgaagagggtgataatttgaaatttaannnnnnnnncgaagaagctaaatttgtccactcaaacagg 507  Q
    |||||||||             ||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||    
T  4483195 aggacttactttttatttttttaatgactaaattgaagagggtgataatttgaaattt---tttttttttgaagaagctaaatttgtccactcaaacagg 4483291  T
Q  508 caccgg 513  Q
    ||||||    
T  4483292 caccgg 4483297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 123
Target Start/End: Complemental strand, 42796343 - 42796311
Alignment:
Q  91 ccaaatgtcactgctgggttaatgtgaccacct 123  Q
    |||||||||||||||||||||||||||||||||    
T  42796343 ccaaatgtcactgctgggttaatgtgaccacct 42796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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