View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_4 (Length: 447)
Name: NF3009_low_4
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 4e-79; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 97 - 275
Target Start/End: Complemental strand, 30542183 - 30542013
Alignment:
| Q |
97 |
gtcttagttgacgatataactacgctagtggcctttcttgatcgaccctatgcatgtcaatcaatatatataatgattctaatgcaaatttatgacatct |
196 |
Q |
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| T |
30542183 |
gtcttagttgacgatataactacgctagtggcctttcttgatcgaccctatgcatgtcaatcaatatatataatgattctaatgcaaatttatgacatct |
30542084 |
T |
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| Q |
197 |
atgtacgtacgttagagtttggttgaatatgaaatgaaataatgaattcattatcatgtaatagtttgaagtgattttt |
275 |
Q |
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| T |
30542083 |
atgtacgtacgttagagtttggttgaatatgaaa--------tgaattcattatcatgtaatagtttgaagtgattttt |
30542013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 291 - 374
Target Start/End: Complemental strand, 30542022 - 30541939
Alignment:
| Q |
291 |
agtgattttttatatgggagctgttggtgcaaaatttacttggaggggaccactttttaactatatttccaggattttgaacaa |
374 |
Q |
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| T |
30542022 |
agtgattttttacatgggagctgttggtgcaaaatttacttggaggggaccactttttaactatatttccaggattttgaacaa |
30541939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 30541679 - 30541612
Alignment:
| Q |
372 |
caatgcattaaatcatgaagggttaaagttctctttccatgattagaattctactaatgattcatctc |
439 |
Q |
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| T |
30541679 |
caatgcattaaatcatgaagggttaaagttctctttccatgattagaattctactaatgattcatctc |
30541612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 30542261 - 30542229
Alignment:
| Q |
18 |
aatttgtgtttggtcaagaagagttagtagtac |
50 |
Q |
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| T |
30542261 |
aatttgtgtttggtcaagaagagttagtagtac |
30542229 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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