View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3009_low_5 (Length: 446)
Name: NF3009_low_5
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 201 - 431
Target Start/End: Original strand, 25246286 - 25246513
Alignment:
| Q |
201 |
ccgtcccttgagctaccgacttggcaattgaaattgccaaatgccagatacatcgcgtaatgttgttgtttgcattaccaaacttcataggatgctttat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25246286 |
ccgtcccttgagctaccgacttggcaattgaaattgccaaatgccagatacatcgcgtaatgttgttgtttgcattaccaaacttcataggatgctttat |
25246385 |
T |
|
| Q |
301 |
ttgcttgtagtttaaaaagctataatcccttttattaatattaattattgcttgaagattttttaagacagttgtagcttcattttctttgtcattatct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25246386 |
ttgcttgtagtttaaaaagctataatcccttttattaatatt-attattgcttgaagattttttaagacagttgtagcttcattttctttgtcattatct |
25246484 |
T |
|
| Q |
401 |
cccttgcatatctctcctttttaatgattgt |
431 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
25246485 |
cccttgc--atctctcctttttaatgattgt |
25246513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 25246088 - 25246226
Alignment:
| Q |
1 |
tgggtttgacttgtgcactcaggcaattaaatttctttgttcttatcaattacgtgggagccaccaacagctgagagtgacacagcttaccgttggagtc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25246088 |
tgggtttgacttgtgcactcaggcaattaaatttctttgttcttatcaattacgtgggagccaccaacagctgagagtgacacagcttaccgttggagtc |
25246187 |
T |
|
| Q |
101 |
tgctttatctttctttaaatggaatccatattttatatc |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25246188 |
tgctttatctttctttaaatggaatccatattttatatc |
25246226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University