View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_6 (Length: 445)
Name: NF3009_low_6
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 437
Target Start/End: Complemental strand, 28156685 - 28156265
Alignment:
| Q |
17 |
acttcaaaccagtttgattaaaaccaggaaccggaccggtgaacaaattatcttgcaagtagagaacatacaaccgcggaaccttaaccaacgacgccgg |
116 |
Q |
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| T |
28156685 |
acttcaaaccagtttgattaaaacgaggaaccgaaccggtgaacaaattatcttgcaagtagagaacatacaaccgcggaaccttaaccaacgacgccgg |
28156586 |
T |
|
| Q |
117 |
aatctcgccggagattctattaccagacagaacaataactttaacacggtgaagaacggaaacagaaaccggaaactgaccggagaaatgattatcatta |
216 |
Q |
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| T |
28156585 |
aatctcgccggagattctattaccagacagaacaataactttaacacggtgaagaacggaaacagaaaccggaaactgaccggagaaatcattatcatta |
28156486 |
T |
|
| Q |
217 |
agatatagagatttgagattaacaagatttgagagattaggaatttgacccgaaagtgagtttcctttgaaactaagaactcgaagttgatccaaacggt |
316 |
Q |
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| T |
28156485 |
agatatagagatttgagattaacaagatttgaaagattaggaatttgacccgaaagcgagtttcctttgaaactaagaactcgaagttgatccaaacggt |
28156386 |
T |
|
| Q |
317 |
ttaaaatgtttgaatctaatttcccagttaagttgaaatattcgagtactagctttctaactttgcctttgtaacaatctttaactcccacccaagtgca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28156385 |
ttaaaatgtttgaatctaatttcccagttaagttgaaatattcgagtactagctttctaactttgcctttgtaacaatctttaactcccacccaagtgca |
28156286 |
T |
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| Q |
417 |
aacatcattgttcttcatctc |
437 |
Q |
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|||||||| ||||||| |||| |
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| T |
28156285 |
aacatcatcgttcttcttctc |
28156265 |
T |
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