View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3009_low_8 (Length: 362)
Name: NF3009_low_8
Description: NF3009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3009_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 6 - 341
Target Start/End: Complemental strand, 2632922 - 2632600
Alignment:
| Q |
6 |
agatgattatattgaatgatgaatagaaagaaattaagatttaagacagagagagtgtgttactaatactatgttagcagtaggcagacaatgcacaaac |
105 |
Q |
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| T |
2632922 |
agatgattatattgaatgatgaatagaaagaaattaagatttaagacagagagagtgtgttacta------tgttagcagtaggcagacaatgcacaaac |
2632829 |
T |
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| Q |
106 |
atagctgctgcattaaatagattgcaagctgtggaccgaaatttgatgtgtgaattccaataatggcctttctttttattttatcaagttcgatttcata |
205 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2632828 |
atagctgc---attaaatagattgcaagctgtggaccgaaatttgatgtgtgaattccaataatgggctttctttttattttatcaagttcgatttcata |
2632732 |
T |
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| Q |
206 |
aaaatgactgagaaaacctcagcactgtgtttttaactgttgtcttgattgattgtgcattttgtcgcctatattcattaaagcataatgttttgtcaac |
305 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2632731 |
aaaatgactgagaaaacctcagcactctgtttttaactgttgtcttg----attgtgcattttgtcgcctatattcattaaagcataatgttttgtcaac |
2632636 |
T |
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| Q |
306 |
attctgccaaaataatattttattattaaattaaat |
341 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2632635 |
attctgccaaaataatattttattattaaattaaat |
2632600 |
T |
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