View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010-Insertion-11 (Length: 301)
Name: NF3010-Insertion-11
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010-Insertion-11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 47004964 - 47004671
Alignment:
| Q |
8 |
acagcaacctatgaatggaaattatagcattagaaatgctttaatgaatgtgtacactgataatcttggtggttacgaagatgattttgaaacaagtgaa |
107 |
Q |
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| T |
47004964 |
acagcaacctatgaatggaaattatagcattagaaatgctttaatgaatgtgtacactgataatcttggtggttacgaagatgattttgaaacaagtgaa |
47004865 |
T |
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| Q |
108 |
attgatctctttgattgtgaagaggatgataatttggatgaagttgacacgtcaatcaaaggtaggagaagagatgatggcatctttctgagaatcagaa |
207 |
Q |
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| T |
47004864 |
attgatctctttgattgtgaagaggatgataatttggatgaagttgacacgtcaatcaaaggtaggagaagagatgatggcatctttctgagaatcagaa |
47004765 |
T |
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| Q |
208 |
taccagataaggaaggttagtaatggcatttctctttcttactttcccactgcatttgtttcagtctttgattattccatattgtgttgttttg |
301 |
Q |
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| T |
47004764 |
taccagataaggaaggttagtaatggcatttctctttcttactttcccactgcatttgtttcagtctttgattattccatattgtgttgttttg |
47004671 |
T |
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