View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010-Insertion-4 (Length: 825)
Name: NF3010-Insertion-4
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 605; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 8 - 692
Target Start/End: Complemental strand, 17461836 - 17461155
Alignment:
| Q |
8 |
atatactaatatgcatttacaactccacctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17461836 |
atatactaatatgcatttacaactccacctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
17461737 |
T |
|
| Q |
108 |
ggatattagttgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaa |
207 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17461736 |
tgatattagttgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttggtcattggttggtccatttgaccttggaa |
17461637 |
T |
|
| Q |
208 |
aggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgc |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17461636 |
aggttttagctctgatctatttttctccttaacttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgc |
17461537 |
T |
|
| Q |
308 |
aatttatatgagaagaatatggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaa |
407 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
17461536 |
aatttatatgagaagaatatggggacagtcagtgccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttgatccccaa |
17461437 |
T |
|
| Q |
408 |
gcaacccacttaagcgccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaaa |
507 |
Q |
| |
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| T |
17461436 |
gcaacccacttaagcgccaccatacattgtttgctttcttagctttttttgagagttccctgtaaaaggttgaaatcaacaatgtgaaagaaaagtg-aa |
17461338 |
T |
|
| Q |
508 |
tttgatgttttaaccctcatcagaaattctactgaaatagtatagcatatatgattttggattctcagaaagggataacatctataattaatctgtatgc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
17461337 |
tttgatgttttaaccctcatcagaaattctactgaaatag--tagcatatatgattatggactctcagaaagggataacatctataattaatcagtatgc |
17461240 |
T |
|
| Q |
608 |
tttatttgctactattttaccattaatgctattgttgtaatgatattagtcttcaactagtttgtcaaagacatgtattaagata |
692 |
Q |
| |
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|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
17461239 |
tttatttgctactattttaccattaatgctgttgtcgtaatgatattagtattcaactagtttgtcaaagacatgtattaagata |
17461155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 242 - 506
Target Start/End: Original strand, 17455422 - 17455686
Alignment:
| Q |
242 |
tccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagtg |
341 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||| |||||||||||||| ||||| |||||||||| | |||| |||||||||||||||||||||| |
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| T |
17455422 |
tccaacagaaaacttcctccattccatactgatacagaaagcttaattattttgaagagtgcatgcaattcaaatgacaagaatatggggacagtcagtg |
17455521 |
T |
|
| Q |
342 |
ccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttgc |
441 |
Q |
| |
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|||| ||| ||||||||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
17455522 |
ccattgttacaatggtaaatattccttgaagaacgatgtacatcagcaagcgattttgatccccaagcaacccacttaagtgccaccatacattgtttgc |
17455621 |
T |
|
| Q |
442 |
tttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaa |
506 |
Q |
| |
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||||||||| ||||||||||||||||| ||||| || | |||||||||| |||||||| |
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| T |
17455622 |
tttcttagcttttcttgagagttccctgtaaaacattgaagtcgaaaatgtgaaagaaaagtgaa |
17455686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 36 - 107
Target Start/End: Original strand, 17455098 - 17455169
Alignment:
| Q |
36 |
ctactcaaatttgtatacttaacactacgaattagatcaaacaaatagaacctcaatcagaacaaaaaacat |
107 |
Q |
| |
|
|||||||||| ||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
17455098 |
ctactcaaatctgtattcttagcactacgcattagatcaaacaaatagaccctcaatcagaacaaaagacat |
17455169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 733 - 788
Target Start/End: Original strand, 17455746 - 17455801
Alignment:
| Q |
733 |
ttatatacaagtcatttttacggtgagtataaagacggataatatagtacctatct |
788 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
17455746 |
ttatatacaagtcatttttacggtgagtataaagacaaataatatagtacctatct |
17455801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 17455171 - 17455214
Alignment:
| Q |
140 |
caagaacagcattgttgagctctccatcacttgaccttggtcat |
183 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| |
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|
| T |
17455171 |
caagaacagcattgttgaactctccatcacttgatcttggtcat |
17455214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 8e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 241 - 488
Target Start/End: Complemental strand, 52143036 - 52142789
Alignment:
| Q |
241 |
ttccaacagaaaacttccttcgttccatactgatacagcaagcttaattatttggaagaaagcatgcaatttatatgagaagaatatggggacagtcagt |
340 |
Q |
| |
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||||||||| |||||||| ||||||||||||| ||| || ||||| ||||||||||| ||||||||| |||||| | |||||||||||||| |||| |
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| T |
52143036 |
ttccaacaggaaacttccaccgttccatactgaagcagaaaccttaagtatttggaagattacatgcaattcatatgacaggaatatggggacagccagt |
52142937 |
T |
|
| Q |
341 |
gccatggttgcaatggtaaatatgctttgaagaacgatgtacatcagcaagcgattttcatcgccaagcaacccacttaagcgccaccatacattgtttg |
440 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| |||||||| |||| |||||||| ||| |||| | |||||||| ||||||||||| |||||||| |
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| T |
52142936 |
gccatggttgcaatggtaaatatgccttgtagaaaaatgtacattagcatgcgattttgatccccaaatagcccacttaggcgccaccatatattgtttg |
52142837 |
T |
|
| Q |
441 |
ctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaaca |
488 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||| |||||| |
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|
| T |
52142836 |
ctttcttagctttttttgagagttccctgtgaaagattgaagtcaaca |
52142789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 52143129 - 52143069
Alignment:
| Q |
118 |
tgagtaagtcaatcagatgtctcaagaacagcattgttgagctctccatcacttgaccttg |
178 |
Q |
| |
|
||||||||||||| |||| || ||||||||||||||||||||||||| | ||||||||||| |
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| T |
52143129 |
tgagtaagtcaattagatctcccaagaacagcattgttgagctctccgttacttgaccttg |
52143069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 5e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 423 - 732
Target Start/End: Original strand, 774869 - 775177
Alignment:
| Q |
423 |
gccaccatacattgtttgctttcttagcnnnnnnngagagttccctgtaaaaggttgaaatcaacaatgtgaaaggaaagtgaa------------attt |
510 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||| |||||||| |||| |
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|
| T |
774869 |
gccaccatacattgtttgctttcttagcttttcttgagagttccctgtaaaacattgaagtcaacaatgtgaaagaaaagtgaagtgcataaactaattt |
774968 |
T |
|
| Q |
511 |
gatgttttaaccctcatcagaaattctactgaaatagtatagcatatatgattt--tggattctcagaaagggataacatctataattaatctgtatgct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||| |||||| |||| ||||||| |||||||||| |||| | |
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|
| T |
774969 |
gatgttttaaccctcatcagaaattctattgaaatag--tagcagatatgattttatggactctcagggaggggtaacatcaataattaatcaatatgtt |
775066 |
T |
|
| Q |
609 |
ttatttgctactattttaccattaatgctattgttgtaatgatattagtcttcaactagtttgtcaaagacatgtattaagatagaccatattcaagtt- |
707 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||| | ||| ||||||||||||| || |||||| |||| |||||||||| ||||| |
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| T |
775067 |
ttctttgctactattttaccat--------------taatgatattaatattctactagtttgtcaatgaaatgtatcaagacagaccatatttaagtta |
775152 |
T |
|
| Q |
708 |
acttaaatgagactaataagtttgg |
732 |
Q |
| |
|
||| ||||||||||||||||||||| |
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|
| T |
775153 |
actaaaatgagactaataagtttgg |
775177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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