View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3010-Insertion-6 (Length: 662)

Name: NF3010-Insertion-6
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3010-Insertion-6
NF3010-Insertion-6
[»] chr4 (21 HSPs)
chr4 (8-316)||(12698294-12698598)
chr4 (340-556)||(12697984-12698217)
chr4 (549-658)||(12697169-12697278)
chr4 (504-630)||(12592273-12592407)
chr4 (177-316)||(12714414-12714559)
chr4 (136-316)||(12718262-12718455)
chr4 (561-627)||(40147110-40147176)
chr4 (535-627)||(55617464-55617556)
chr4 (535-627)||(55624768-55624860)
chr4 (535-642)||(41519274-41519380)
chr4 (536-627)||(45787146-45787237)
chr4 (503-627)||(51950563-51950695)
chr4 (535-589)||(17232061-17232115)
chr4 (561-642)||(50290230-50290311)
chr4 (547-627)||(25056028-25056108)
chr4 (237-307)||(12690640-12690711)
chr4 (556-626)||(2788038-2788108)
chr4 (534-627)||(24369185-24369278)
chr4 (571-627)||(12498743-12498799)
chr4 (591-643)||(17232036-17232087)
chr4 (571-643)||(41083162-41083233)
[»] chr3 (13 HSPs)
chr3 (535-627)||(40286361-40286453)
chr3 (549-643)||(43650092-43650185)
chr3 (504-630)||(47891229-47891363)
chr3 (535-630)||(25848407-25848502)
chr3 (535-605)||(5442589-5442659)
chr3 (577-642)||(14624211-14624275)
chr3 (488-530)||(14624264-14624307)
chr3 (488-530)||(30955023-30955066)
chr3 (488-530)||(30970835-30970878)
chr3 (546-605)||(51833341-51833400)
chr3 (535-640)||(32186573-32186677)
chr3 (430-490)||(18020035-18020095)
chr3 (535-627)||(27768439-27768531)
[»] chr5 (21 HSPs)
chr5 (534-640)||(38682726-38682831)
chr5 (556-645)||(10074068-10074155)
chr5 (541-627)||(35812028-35812114)
chr5 (535-627)||(5746218-5746311)
chr5 (504-589)||(7209882-7209975)
chr5 (593-642)||(4943079-4943128)
chr5 (488-627)||(1996218-1996367)
chr5 (577-627)||(4943021-4943071)
chr5 (577-627)||(16327263-16327313)
chr5 (496-530)||(23661963-23661997)
chr5 (496-530)||(23796573-23796607)
chr5 (496-530)||(37032975-37033009)
chr5 (504-537)||(14604276-14604309)
chr5 (593-630)||(20927965-20928002)
chr5 (446-487)||(23661899-23661940)
chr5 (446-487)||(23796630-23796671)
chr5 (488-530)||(32361184-32361228)
chr5 (593-642)||(36760778-36760826)
chr5 (488-531)||(12712437-12712481)
chr5 (488-531)||(12773701-12773745)
chr5 (488-537)||(40980727-40980778)
[»] chr2 (12 HSPs)
chr2 (535-627)||(25895028-25895120)
chr2 (555-640)||(4511499-4511583)
chr2 (535-627)||(5009296-5009388)
chr2 (503-640)||(3876838-3876982)
chr2 (503-642)||(31630174-31630319)
chr2 (576-642)||(29379855-29379921)
chr2 (577-642)||(36694421-36694486)
chr2 (595-643)||(4511879-4511926)
chr2 (554-628)||(12612537-12612611)
chr2 (488-530)||(36217220-36217262)
chr2 (488-530)||(36694390-36694432)
chr2 (430-490)||(31630129-31630189)
[»] chr8 (11 HSPs)
chr8 (546-642)||(24827466-24827561)
chr8 (535-642)||(14550131-14550237)
chr8 (535-627)||(36052958-36053051)
chr8 (535-627)||(27855680-27855771)
chr8 (535-642)||(9399925-9400030)
chr8 (535-589)||(22813461-22813515)
chr8 (598-642)||(9400011-9400055)
chr8 (537-581)||(15564000-15564044)
chr8 (595-627)||(20209383-20209415)
chr8 (595-627)||(20229091-20229123)
chr8 (578-642)||(27127983-27128046)
[»] chr7 (11 HSPs)
chr7 (534-642)||(43258353-43258460)
chr7 (560-627)||(40951753-40951820)
chr7 (535-640)||(4048335-4048439)
chr7 (535-643)||(26185855-26185960)
chr7 (593-642)||(11975620-11975669)
chr7 (535-604)||(27280747-27280816)
chr7 (430-490)||(30662219-30662279)
chr7 (561-640)||(3198370-3198448)
chr7 (488-530)||(4048218-4048262)
chr7 (504-537)||(27280879-27280912)
chr7 (595-627)||(44293895-44293927)
[»] chr1 (8 HSPs)
chr1 (535-642)||(52913249-52913355)
chr1 (537-627)||(1173133-1173223)
chr1 (535-627)||(2633268-2633360)
chr1 (583-639)||(33650570-33650626)
chr1 (556-642)||(18981099-18981184)
chr1 (535-587)||(41007425-41007477)
chr1 (591-643)||(52913329-52913380)
chr1 (560-596)||(40892451-40892487)
[»] chr6 (7 HSPs)
chr6 (535-621)||(24059798-24059884)
chr6 (535-643)||(35225506-35225613)
chr6 (577-639)||(9982782-9982843)
chr6 (556-642)||(364139-364226)
chr6 (488-530)||(364215-364258)
chr6 (488-530)||(17136920-17136964)
chr6 (579-643)||(2761509-2761572)
[»] scaffold0128 (1 HSPs)
scaffold0128 (550-645)||(2529-2623)
[»] scaffold0002 (1 HSPs)
scaffold0002 (488-530)||(12322-12364)
[»] scaffold0018 (1 HSPs)
scaffold0018 (488-530)||(161682-161726)
[»] scaffold0157 (1 HSPs)
scaffold0157 (571-627)||(21678-21734)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 8 - 316
Target Start/End: Complemental strand, 12698598 - 12698294
Alignment:
Q  8 acgaggacaaactcctaccatctgatacgattctaggggaccaatcaatccgaagttatctacaaaatctgctgaataagataaagaagaaccggccaag 107  Q
    |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12698598 acgaagacaaacttctaccatccgatacgattctaggggaccaatcaatccgaagttatctacaaaatctgctgaataagataaagaagaaccgaccaag 12698499  T
Q  108 tgggatgtgtcctaactaactaactaactgatttgaacaaaacaattggcccatattgtgtcctactttgttcacgttgtgcaaatgcttgtttctttat 207  Q
    |||||||||||||||||||||||||||    ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  12698498 tgggatgtgtcctaactaactaactaa----tttgaacaaaataattggcccatattgtgtcctactttgttcacattgtgcaaatgcttgtttctttat 12698403  T
Q  208 caaatagtgcttcgaattgatagcatgaattaaaaattgtgatgtttccccatcacgtagaaaaggaaatgaacctcataccccacgtcaattacaactt 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12698402 caaatagtgctttgaattgatagcatgaattaaaaattgtgatgtttccccatcacgtagaaaaggaaatgaacctcataccccacgtcaattacaactt 12698303  T
Q  308 gatagatga 316  Q
    |||||||||    
T  12698302 gatagatga 12698294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 340 - 556
Target Start/End: Complemental strand, 12698217 - 12697984
Alignment:
Q  340 tctttagggtatcgattccatcgccaccaccatgtggggactatccaaatagt-----------------ggcaaatacttcttcaaataaaaaggctaa 422  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||| |||||||||||||||||    
T  12698217 tctttagggtatcgattccatcgccaccaccatgtggggactatccaaatagtagaattacaaacgtggtggcaaatacttcctcaaataaaaaggctaa 12698118  T
Q  423 acaggtcttaagtttgagattgataacagatttatcttttaagctattttgcttacacataagtctttgtaatagattaattttaagttattttggtcac 522  Q
    | |||||||||||||||||| ||||||||||||||| |||||| ||||||  |||||||  ||||||||||| |||||||||||||||||||||||||||    
T  12698117 agaggtcttaagtttgagatcgataacagatttatcatttaagttattttatttacacacgagtctttgtaacagattaattttaagttattttggtcac 12698018  T
Q  523 acataagtacgttaaacgtttttaatttagttct 556  Q
    |||||||||  ||||||||||| |||||||||||    
T  12698017 acataagtatcttaaacgttttcaatttagttct 12697984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 549 - 658
Target Start/End: Complemental strand, 12697278 - 12697169
Alignment:
Q  549 ttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgataactt 648  Q
    ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12697278 ttagttcttctattaatcaaacattacaaaaacgatgatgtgacataaggactaaataaaaaatgtttacaaacttaaaaggacttatgtgtgataactt 12697179  T
Q  649 aaatgatcaa 658  Q
    ||||||||||    
T  12697178 aaatgatcaa 12697169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 504 - 630
Target Start/End: Original strand, 12592273 - 12592407
Alignment:
Q  504 tttaagttattttggtcacacataa-----gtacgtt---aaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacaga 595  Q
    |||||||||||||||||||||||||     ||| |||   ||||||||| ||||||||  |||| | || |||||||||||||||||||||||| |||||    
T  12592273 tttaagttattttggtcacacataaatcttgtaagtttgtaaacgttttcaatttagtcattctgtcaaccaaacattacaaaaacgatgatgtgacaga 12592372  T
Q  596 aggactaaataaaaaatgtttacaaacttaaaaga 630  Q
    ||||||||||  ||||  |||||||||||||||||    
T  12592373 aggactaaatcgaaaacttttacaaacttaaaaga 12592407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 177 - 316
Target Start/End: Complemental strand, 12714559 - 12714414
Alignment:
Q  177 gttcacgttgtgcaaatgctt-gtttctttatcaaatagtgcttcgaattgatagcatgaatt-aaaaattgtgatgtttccccatca-cgtaga-aaag 272  Q
    |||||||||||||||||  || |||||||| |||| |    ||||||||||||||||| |||| ||||||||||||||||||| |||| |||  | ||||    
T  12714559 gttcacgttgtgcaaattttttgtttctttctcaactgagccttcgaattgatagcattaattgaaaaattgtgatgtttcccaatcatcgtctagaaag 12714460  T
Q  273 gaaatgaacctc--ataccccacgtcaattacaacttgatagatga 316  Q
    |||||||| |||  ||||||||||||||||||||||||| ||||||    
T  12714459 gaaatgaaactcatataccccacgtcaattacaacttgagagatga 12714414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 136 - 316
Target Start/End: Complemental strand, 12718455 - 12718262
Alignment:
Q  136 tgatttgaacaaaacaattggcccatattgtgtcctactttgttcacgttgtgcaaatgcttgtttctttat------------caaatagtgcttcgaa 223  Q
    |||||||||||||||||||||||||||  || || |||| ||| |||||||| |||||| |||||| ||| |            ||||||| ||||||||    
T  12718455 tgatttgaacaaaacaattggcccataacgtatcttactctgtccacgttgttcaaatgtttgtttttttttttttttttctctcaaatagagcttcgaa 12718356  T
Q  224 ttgatagcatgaatt--aaaaattgtgatgtttccccatcacgtagaaaaggaaatgaacctcataccccacgtcaattacaacttgatagatga 316  Q
    |||||  ||| | ||  ||||| |||| |||||||| ||||  |||||| ||||||||| |||||||||||||||||||||||||||| ||||||    
T  12718355 ttgatgacattagttgaaaaaaatgtgttgtttccctatcatctagaaa-ggaaatgaaactcataccccacgtcaattacaacttgagagatga 12718262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 561 - 627
Target Start/End: Original strand, 40147110 - 40147176
Alignment:
Q  561 ttaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||| |||||||||||||||||||||||| |||||||||||||||  |||||||||||||| |||||    
T  40147110 ttaaccaaacattacaaaaacgatgatgtgacagaaggactaaatcgaaaatgtttacaaatttaaa 40147176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 55617556 - 55617464
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||| ||||| |||||||| ||| | ||||| |||||||||||||||||||||||  ||||| |||||||| ||| || ||||||||||||||    
T  55617556 taaatgttttcaatttagtccttttgttaattaaacattacaaaaacgatgatgtgtcagaatgactaaatcaaacatttttacaaacttaaa 55617464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 55624860 - 55624768
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||| ||||| |||||||| ||| | ||||| |||||||||||||||||||||||  ||||| |||||||| ||| || ||||||||||||||    
T  55624860 taaatgttttcaatttagtccttttgttaattaaacattacaaaaacgatgatgtgtcagaatgactaaatcaaacatttttacaaacttaaa 55624768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 642
Target Start/End: Original strand, 41519274 - 41519380
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    |||||||||| ||||| ||  || | |||| ||||||||||||||||||| | ||  || ||||| ||||| ||||||||||||||||||||||| ||||    
T  41519274 taaacgttttcaatttggtctttatgttaaccaaacattacaaaaacgattaagtgtcaaaaggattaaatcaaaaatgtttacaaacttaaaag-actt 41519372  T
Q  635 atgtgtga 642  Q
    ||||||||    
T  41519373 atgtgtga 41519380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 536 - 627
Target Start/End: Complemental strand, 45787237 - 45787146
Alignment:
Q  536 aaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||||||| ||||||||  |||| |||| |||| ||||||||||| ||||||| ||||||| |||||||  |||||||||| |||||||||    
T  45787237 aaacgttttcaatttagtcattcttttaaccaaatattacaaaaacaatgatgtgacagaagaactaaatcgaaaatgtttataaacttaaa 45787146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 503 - 627
Target Start/End: Original strand, 51950563 - 51950695
Alignment:
Q  503 ttttaagttattttggtcacacataagtacgttaa--------acgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacag 594  Q
    |||||||||||||||||||||||||||| | ||||        | ||||| |||||||| ||||||||||  | || ||||||||| |||||||| |||     
T  51950563 ttttaagttattttggtcacacataagtcctttaagtttgtaaatgttttcaatttagtccttctattaacgagacgttacaaaaatgatgatgtgacaa 51950662  T
Q  595 aaggactaaataaaaaatgtttacaaacttaaa 627  Q
    || ||||||||  ||||||||||||||||||||    
T  51950663 aatgactaaattgaaaatgtttacaaacttaaa 51950695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 589
Target Start/End: Original strand, 17232061 - 17232115
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgt 589  Q
    |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||    
T  17232061 taaacgttttcaatttagttcttctgttaaccaaacattacaaaaacgatgatgt 17232115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 561 - 642
Target Start/End: Complemental strand, 50290311 - 50290230
Alignment:
Q  561 ttaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||| |||| |||||||||| |||||||| |||||| |||||||| |||||| |||| ||||||||||| | ||||||||||    
T  50290311 ttaaccaaatattacaaaaatgatgatgtgacagaatgactaaatcaaaaatatttaaaaacttaaaagtatttatgtgtga 50290230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 547 - 627
Target Start/End: Original strand, 25056028 - 25056108
Alignment:
Q  547 atttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||||| ||||| |||| |||||||||||||||| ||| |||  ||||||||||||||  |||| |||||||||||||||    
T  25056028 atttagtccttctgttaaccaaacattacaaaaactatgttgtggcagaaggactaaattgaaaacgtttacaaacttaaa 25056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 237 - 307
Target Start/End: Original strand, 12690640 - 12690711
Alignment:
Q  237 ttaaaaattgtgatgtttccccatcacgtagaaaaggaaatgaacctc--ataccccacgtcaattacaactt 307  Q
    ||||||| | ||||||||||| ||||| || ||||||||||||| |||  |||||||||||||||||||||||    
T  12690640 ttaaaaaatttgatgtttcccaatcaccta-aaaaggaaatgaaactcctataccccacgtcaattacaactt 12690711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 626
Target Start/End: Original strand, 2788038 - 2788108
Alignment:
Q  556 ttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaa 626  Q
    |||| |||| |||||| ||||||| |||||||||  |||||| |||||||  ||||||||||| |||||||    
T  2788038 ttctgttaaccaaacactacaaaaccgatgatgtggcagaagaactaaatcgaaaatgtttaccaacttaa 2788108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 534 - 627
Target Start/End: Original strand, 24369185 - 24369278
Alignment:
Q  534 ttaaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||||||||| |||||||| ||| | |||| ||||| ||||||| | ||||||||  || || ||||||||  ||||  ||||||||||||||    
T  24369185 ttaaacgttttcaatttagtccttttgttaaccaaacgttacaaacatgatgatgtggcaaaaagactaaatcgaaaacatttacaaacttaaa 24369278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 627
Target Start/End: Complemental strand, 12498799 - 12498743
Alignment:
Q  571 attacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||| ||||||||  ||||||||||||||  ||| | ||||||||||||||    
T  12498799 attacaaaaaagatgatgtggcagaaggactaaattgaaattttttacaaacttaaa 12498743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 591 - 643
Target Start/End: Complemental strand, 17232087 - 17232036
Alignment:
Q  591 acagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    ||||||| |||||||  |||| ||||||||||||||||| |||||||||||||    
T  17232087 acagaagaactaaattgaaaacgtttacaaacttaaaag-acttatgtgtgat 17232036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 643
Target Start/End: Complemental strand, 41083233 - 41083162
Alignment:
Q  571 attacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    |||||||||| ||||||||  || |||||||||||   ||| |||||||||||| |||| |||||||||||||    
T  41083233 attacaaaaaagatgatgtggcaaaaggactaaatttgaaacgtttacaaactt-aaaggacttatgtgtgat 41083162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 7e-26; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 40286453 - 40286361
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||  ||||| ||||||||||||||    
T  40286453 taaacattttcaatttagttcttctattaaccaaacattacaaaaacgatgatgtgacagaagtactaaatcgaaaatatttacaaacttaaa 40286361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 549 - 643
Target Start/End: Complemental strand, 43650185 - 43650092
Alignment:
Q  549 ttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    ||||| ||||| ||||  |||||||||||||||||||||||  ||||| ||||||||  |||||||||||||||||||||| | |||||||||||    
T  43650185 ttagtccttctgttaacaaaacattacaaaaacgatgatgtggcagaaagactaaatcgaaaatgtttacaaacttaaaag-atttatgtgtgat 43650092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 504 - 630
Target Start/End: Complemental strand, 47891363 - 47891229
Alignment:
Q  504 tttaagttattttggtcacacataagt-----acgtt---aaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacaga 595  Q
    |||||||||||||||||||||||||||     | |||   ||||||||| |||||||| ||| | |||| ||||| |||||||||||||||||| ||| |    
T  47891363 tttaagttattttggtcacacataagtcttttaagtttgtaaacgttttcaatttagtccttatgttaaccaaacgttacaaaaacgatgatgtgacaaa 47891264  T
Q  596 aggactaaataaaaaatgtttacaaacttaaaaga 630  Q
    | ||||||||  ||||  |||||||||||||||||    
T  47891263 atgactaaatcgaaaacatttacaaacttaaaaga 47891229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 535 - 630
Target Start/End: Complemental strand, 25848502 - 25848407
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaaga 630  Q
    |||| ||||| |||||||| ||||| |||| ||||||||||||||| ||| ||||  ||||||||||||||   ||| ||||||||||||||||||    
T  25848502 taaatgttttcaatttagtccttctgttaaccaaacattacaaaaatgattatgtggcagaaggactaaatcgcaaacgtttacaaacttaaaaga 25848407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 535 - 605
Target Start/End: Original strand, 5442589 - 5442659
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaat 605  Q
    |||| ||||| |||||||||||| | |||| | |||||||||||||||||||||| |||||||||||||||    
T  5442589 taaatgttttcaatttagttcttatgttaacccaacattacaaaaacgatgatgtgacagaaggactaaat 5442659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 642
Target Start/End: Original strand, 14624211 - 14624275
Alignment:
Q  577 aaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||||||| ||||||| | |||||  |||| ||||||||||||||||| ||||||||||||    
T  14624211 aaaacgatgatgtgacagaagaattaaattgaaaacgtttacaaacttaaaag-acttatgtgtga 14624275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 14624307 - 14624264
Alignment:
Q  488 tttgtaatagatta-attttaagttattttggtcacacataagt 530  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  14624307 tttgtaatagattagattttaagttattctggtcacacataagt 14624264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 30955066 - 30955023
Alignment:
Q  488 tttgtaatagattaat-tttaagttattttggtcacacataagt 530  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  30955066 tttgtaatagattagtgtttaagttattttggtcacacataagt 30955023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 30970878 - 30970835
Alignment:
Q  488 tttgtaatagattaat-tttaagttattttggtcacacataagt 530  Q
    |||||||||||||| | |||||||||||||||||||||||||||    
T  30970878 tttgtaatagattagtgtttaagttattttggtcacacataagt 30970835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 546 - 605
Target Start/End: Complemental strand, 51833400 - 51833341
Alignment:
Q  546 aatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaat 605  Q
    |||||||||||||| |||| ||||| ||||||||| |||||||| |||||| || |||||    
T  51833400 aatttagttcttctgttaaccaaacgttacaaaaatgatgatgtgacagaaagattaaat 51833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 640
Target Start/End: Complemental strand, 32186677 - 32186573
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    |||||||||| ||||||||  || | |||| ||||| | ||||||| ||||||||   |||||||||||||  |||| ||||| |||||| |||| ||||    
T  32186677 taaacgttttcaatttagtctttttgttaaccaaacgtaacaaaaatgatgatgtggtagaaggactaaatcgaaaacgtttaaaaactt-aaaggactt 32186579  T
Q  635 atgtgt 640  Q
    ||||||    
T  32186578 atgtgt 32186573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 490
Target Start/End: Complemental strand, 18020095 - 18020035
Alignment:
Q  430 ttaagtttgagattgataacagatttatcttttaagctattttgcttacacataagtcttt 490  Q
    |||||||| || || ||||||||||  || |||||| ||||||| ||||||||||||||||    
T  18020095 ttaagtttaaggtttataacagattggtcgtttaagttattttggttacacataagtcttt 18020035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 627
Target Start/End: Original strand, 27768439 - 27768531
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||| ||||||||   ||| |||| ||||| ||||||||| |||||||| | |||   || ||||  ||||||||||||||||||||    
T  27768439 taaacgttttaaatttagtcaatctgttaaccaaacgttacaaaaatgatgatgtgagagacaaaccaaatcgaaaatgtttacaaacttaaa 27768531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 534 - 640
Target Start/End: Original strand, 38682726 - 38682831
Alignment:
Q  534 ttaaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaact 633  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||||| || |  ||||| ||||||||  |||||||||||||||||||||| |||    
T  38682726 ttaaacattttcaatttagttcttctattaatcaaactttacaaaaacgataatatggcagaaagactaaatcgaaaatgtttacaaacttaaaag-act 38682824  T
Q  634 tatgtgt 640  Q
    |||||||    
T  38682825 tatgtgt 38682831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 645
Target Start/End: Original strand, 10074068 - 10074155
Alignment:
Q  556 ttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgataa 645  Q
    ||||||||| ||||||||||||||| |||||| |   ||||||| |||||  ||||||||||||||||||||  ||||||||||||||||    
T  10074068 ttctattaaccaaacattacaaaaatgatgatatagtagaaggattaaatcgaaaatgtttacaaacttaaa--aacttatgtgtgataa 10074155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 541 - 627
Target Start/End: Complemental strand, 35812114 - 35812028
Alignment:
Q  541 tttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||| ||||||  ||||||||| ||||| |||||||||| |||||||  ||| | || |||||||||||||||||||||||||||    
T  35812114 tttttattttagtcattctattaaccaaactttacaaaaacaatgatgtggcaggatgaataaataaaaaatgtttacaaacttaaa 35812028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 5746311 - 5746218
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacga-tgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||||||||||  |||| |||| ||||| |||||||||| | ||||||   ||||| ||||||||||||| |||||||||||||||    
T  5746311 taaacgtttttaatttagtctttctgttaaccaaacgttacaaaaacaaatgatgtggtagaagaactaaataaaaaacgtttacaaacttaaa 5746218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 504 - 589
Target Start/End: Original strand, 7209882 - 7209975
Alignment:
Q  504 tttaagttattttggtcacacataagtacgttaa--------acgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgt 589  Q
    ||||||||||||||||||||||||||| | ||||        ||||||| |||||||||||| | |||| ||||||||||||||||||||||||    
T  7209882 tttaagttattttggtcacacataagtcctttaagtttgtaaacgttttcaatttagttcttatgttaaccaaacattacaaaaacgatgatgt 7209975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 593 - 642
Target Start/End: Original strand, 4943079 - 4943128
Alignment:
Q  593 agaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||| ||||||||  |||||||||||||||||||||||||||||||||||    
T  4943079 agaatgactaaattgaaaatgtttacaaacttaaaagaacttatgtgtga 4943128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 488 - 627
Target Start/End: Original strand, 1996218 - 1996367
Alignment:
Q  488 tttgtaatagattaat--tttaagttattttggtcacacataagtac-----gtt---aaacgtttttaatttagttcttctattaatcaaacattacaa 577  Q
    |||||||||||||| |  ||||||||||||||||||||||||||| |     |||   ||||||||| ||||||||  || |  ||| ||||||||||||    
T  1996218 tttgtaatagattagtcctttaagttattttggtcacacataagtcctataagtttgtaaacgttttcaatttagtctttttgataaccaaacattacaa 1996317  T
Q  578 aaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||| |||||||  ||||| ||||||||  |||||  |||||||||||||    
T  1996318 aaacaatgatgtggcagaatgactaaatcgaaaatccttacaaacttaaa 1996367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 577 - 627
Target Start/End: Complemental strand, 4943071 - 4943021
Alignment:
Q  577 aaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||||  || ||||||||||| |||||||||||||||||||||    
T  4943071 aaaacgatgatgtgtcaaaaggactaaattaaaaatgtttacaaacttaaa 4943021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 577 - 627
Target Start/End: Original strand, 16327263 - 16327313
Alignment:
Q  577 aaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||||  ||||||||||||||  |||| |||||||||||||||    
T  16327263 aaaacgatgatgtggcagaaggactaaattgaaaacgtttacaaacttaaa 16327313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 530
Target Start/End: Original strand, 23661963 - 23661997
Alignment:
Q  496 agattaattttaagttattttggtcacacataagt 530  Q
    ||||| |||||||||||||||||||||||||||||    
T  23661963 agattgattttaagttattttggtcacacataagt 23661997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 530
Target Start/End: Complemental strand, 23796607 - 23796573
Alignment:
Q  496 agattaattttaagttattttggtcacacataagt 530  Q
    ||||| |||||||||||||||||||||||||||||    
T  23796607 agattgattttaagttattttggtcacacataagt 23796573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 496 - 530
Target Start/End: Complemental strand, 37033009 - 37032975
Alignment:
Q  496 agattaattttaagttattttggtcacacataagt 530  Q
    |||||| ||||||||||||||||||||||||||||    
T  37033009 agattagttttaagttattttggtcacacataagt 37032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 14604309 - 14604276
Alignment:
Q  504 tttaagttattttggtcacacataagtacgttaa 537  Q
    ||||||||||||||||||||||||||| ||||||    
T  14604309 tttaagttattttggtcacacataagttcgttaa 14604276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 630
Target Start/End: Complemental strand, 20928002 - 20927965
Alignment:
Q  593 agaaggactaaataaaaaatgtttacaaacttaaaaga 630  Q
    |||||||||||||  |||||||||||||||||||||||    
T  20928002 agaaggactaaatcgaaaatgtttacaaacttaaaaga 20927965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Original strand, 23661899 - 23661940
Alignment:
Q  446 taacagatttatcttttaagctattttgcttacacataagtc 487  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  23661899 taacagattgatcttttaagttattttggttacacataagtc 23661940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 446 - 487
Target Start/End: Complemental strand, 23796671 - 23796630
Alignment:
Q  446 taacagatttatcttttaagctattttgcttacacataagtc 487  Q
    ||||||||| |||||||||| ||||||| |||||||||||||    
T  23796671 taacagattgatcttttaagttattttggttacacataagtc 23796630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Original strand, 32361184 - 32361228
Alignment:
Q  488 tttgtaatagattaat--tttaagttattttggtcacacataagt 530  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||    
T  32361184 tttgtaatagattgatcatttaagttattttggtcacacataagt 32361228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 642
Target Start/End: Original strand, 36760778 - 36760826
Alignment:
Q  593 agaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||||||||||||  |||||||||||||||| ||||| ||||||||||||    
T  36760778 agaaggactaaattgaaaatgtttacaaactaaaaag-acttatgtgtga 36760826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 531
Target Start/End: Original strand, 12712437 - 12712481
Alignment:
Q  488 tttgtaatagattaatttt-aagttattttggtcacacataagta 531  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||    
T  12712437 tttgtaatagattgatttttaagttattttgatcacacataagta 12712481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 531
Target Start/End: Original strand, 12773701 - 12773745
Alignment:
Q  488 tttgtaatagattaatttt-aagttattttggtcacacataagta 531  Q
    ||||||||||||| ||||| ||||||||||| |||||||||||||    
T  12773701 tttgtaatagattgatttttaagttattttgatcacacataagta 12773745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 488 - 537
Target Start/End: Original strand, 40980727 - 40980778
Alignment:
Q  488 tttgtaatagattaat--tttaagttattttggtcacacataagtacgttaa 537  Q
    ||||||||||||| ||  |||||||||||||| |||||||||||||| ||||    
T  40980727 tttgtaatagattgatcatttaagttattttgatcacacataagtactttaa 40980778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 25895120 - 25895028
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||| |||||||| ||| | |||| ||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||    
T  25895120 taaacgttttcaatttagtccttttgttaaccaaacattacaaaaacgatgatgtggtagaaggactaaatcaaaaatgtttacaaacttaaa 25895028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 555 - 640
Target Start/End: Complemental strand, 4511583 - 4511499
Alignment:
Q  555 cttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgt 640  Q
    |||||||||||||||||||||||||||||||||||  |||||||| |||||  |||||||||||||||||||| | ||||||||||    
T  4511583 cttctattaatcaaacattacaaaaacgatgatgtggcagaaggattaaatcgaaaatgtttacaaacttaaatg-acttatgtgt 4511499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 535 - 627
Target Start/End: Original strand, 5009296 - 5009388
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||| ||||| |||||||| ||||| |||| ||||||||||||||||||||||||  |||||| |||||||  |||| |||||||||||||||    
T  5009296 taaatgttttcaatttagtccttctcttaaccaaacattacaaaaacgatgatgtggcagaagaactaaattgaaaacgtttacaaacttaaa 5009388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 640
Target Start/End: Complemental strand, 3876982 - 3876838
Alignment:
Q  503 ttttaagttattttggtcacacataagt-----acgt---taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacag 594  Q
    ||||||||||||||||||||||||||||     ||||   ||||| |||  |||||||| |||||||||| |||||||||||||||||||||||   |||    
T  3876982 ttttaagttattttggtcacacataagtcctttacgtatgtaaacctttccaatttagtccttctattaaccaaacattacaaaaacgatgatggggcag 3876883  T
Q  595 aaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgt 640  Q
    || |||| |||  |||| ||||||||||||||| | ||||||||||    
T  3876882 aatgacttaattgaaaacgtttacaaacttaaatg-acttatgtgt 3876838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 503 - 642
Target Start/End: Complemental strand, 31630319 - 31630174
Alignment:
Q  503 ttttaagttattttggtcacacataagt----acgtt---aaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacaga 595  Q
    ||||||||||||||||||||||||||||    | |||   ||| ||||| ||||||||  || | |||| ||||  ||||||||||||||||||  ||||    
T  31630319 ttttaagttattttggtcacacataagtctttaagtttgtaaatgttttcaatttagtcattttgttaaccaaatgttacaaaaacgatgatgtggcaga 31630220  T
Q  596 aggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||||  |||| ||||||||||||||||| ||||||||||||    
T  31630219 aggactaaatcgaaaacgtttacaaacttaaaag-acttatgtgtga 31630174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 576 - 642
Target Start/End: Original strand, 29379855 - 29379921
Alignment:
Q  576 aaaaacgatgatgttacagaaggactaaat-aaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||| ||||||||  |||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  29379855 aaaaatgatgatgtggcagaaggactaaatcaaaaaatgtttacaatctt-aaagaacttatgtgtga 29379921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 577 - 642
Target Start/End: Complemental strand, 36694486 - 36694421
Alignment:
Q  577 aaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||| ||||||||  ||||||||||||||  ||||| |||||||||||||||| |||||| |||||    
T  36694486 aaaatgatgatgtggcagaaggactaaattgaaaatatttacaaacttaaaaggacttatatgtga 36694421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 595 - 643
Target Start/End: Complemental strand, 4511926 - 4511879
Alignment:
Q  595 aaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    ||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  4511926 aaggactaaattaaaaacgtttacaaacttaaaag-acttatgtgtgat 4511879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 554 - 628
Target Start/End: Original strand, 12612537 - 12612611
Alignment:
Q  554 tcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaat-aaaaaatgtttacaaacttaaaa 628  Q
    |||||| |||| |||||||||| |||||||||||||| ||||| ||| ||||  |||||||||||||||| |||||    
T  12612537 tcttctgttaaccaaacattac-aaaacgatgatgttgcagaatgacaaaatcgaaaaatgtttacaaacctaaaa 12612611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 36217262 - 36217220
Alignment:
Q  488 tttgtaatagattaattttaagttattttggtcacacataagt 530  Q
    ||||||| | ||| |||||||||||||||||||||||||||||    
T  36217262 tttgtaacaaattgattttaagttattttggtcacacataagt 36217220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Original strand, 36694390 - 36694432
Alignment:
Q  488 tttgtaatagattaattttaagttattttggtcacacataagt 530  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||    
T  36694390 tttgtaacagattagttttaagttattttggtcacatataagt 36694432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 31630129 - 31630189
Alignment:
Q  430 ttaagtttgagattgataacagatttatcttttaagctattttgcttacacataagtcttt 490  Q
    ||||||||||| ||  ||||||||| ||| |||||| ||||||| | ||||||||||||||    
T  31630129 ttaagtttgaggtttgtaacagattgatcctttaagttattttggtcacacataagtcttt 31630189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 546 - 642
Target Start/End: Complemental strand, 24827561 - 24827466
Alignment:
Q  546 aatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||||||| |||||||||| ||||  ||||||||||||||||||| ||||||||||||||  |||| ||||||||| ||||||| ||||||||||||    
T  24827561 aatttagtccttctattaaccaaatgttacaaaaacgatgatgttgcagaaggactaaatcgaaaacgtttacaaatttaaaag-acttatgtgtga 24827466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 535 - 642
Target Start/End: Original strand, 14550131 - 14550237
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    |||||||||| |||||| | ||||| |||| |||||||| |||||| |||||||| ||| | ||| ||||||||||||||||||||||||||| | ||||    
T  14550131 taaacgttttcaatttattccttctgttaaccaaacattgcaaaaatgatgatgtgacatacggaataaataaaaaatgtttacaaacttaaatg-actt 14550229  T
Q  635 atgtgtga 642  Q
    ||||||||    
T  14550230 atgtgtga 14550237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 36053051 - 36052958
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaat-aaaaaatgtttacaaacttaaa 627  Q
    |||| ||||| ||| ||||  |||| |||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||    
T  36053051 taaaagttttcaatctagtcattctgttaaccaaacattacaaaaatgatgatgtgacagaaggactaaatcaaaaaatgtttacaaacttaaa 36052958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 27855771 - 27855680
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||| |||||| ||||||||||||||| |||||| ||||||||||||||  ||||||||||||||  ||||  |||| |||||||||    
T  27855771 taaacgttttcaatttaattcttctattaatcagacatta-aaaaacgatgatgtggcagaaggactaaatcgaaaacatttaaaaacttaaa 27855680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 642
Target Start/End: Complemental strand, 9400030 - 9399925
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    ||||| |||| ||||||||  |||  |||| ||||||||||||||| ||| ||||  || || ||||||||  ||||||||||||| ||||||||  |||    
T  9400030 taaaccttttcaatttagtcattccgttaaccaaacattacaaaaatgatcatgtggcataatgactaaattgaaaatgtttacaatcttaaaag--ctt 9399933  T
Q  635 atgtgtga 642  Q
    ||||||||    
T  9399932 atgtgtga 9399925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 535 - 589
Target Start/End: Complemental strand, 22813515 - 22813461
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgt 589  Q
    |||||||||| ||||||||| ||   |||| ||||||||||||||||||||||||    
T  22813515 taaacgttttcaatttagtttttaggttaaccaaacattacaaaaacgatgatgt 22813461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 598 - 642
Target Start/End: Original strand, 9400011 - 9400055
Alignment:
Q  598 gactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||  |||| ||||||||||||||||| ||||||||||||    
T  9400011 gactaaattgaaaaggtttacaaacttaaaaggacttatgtgtga 9400055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 537 - 581
Target Start/End: Complemental strand, 15564044 - 15564000
Alignment:
Q  537 aacgtttttaatttagttcttctattaatcaaacattacaaaaac 581  Q
    |||||||||||||||||| |||| ||||  |||||||||||||||    
T  15564044 aacgtttttaatttagttattctgttaactaaacattacaaaaac 15564000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 20209415 - 20209383
Alignment:
Q  595 aaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||| ||||||||||||||||||||    
T  20209415 aaggactaaatagaaaatgtttacaaacttaaa 20209383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 20229123 - 20229091
Alignment:
Q  595 aaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||| ||||||||||||||||||||    
T  20229123 aaggactaaatagaaaatgtttacaaacttaaa 20229091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 578 - 642
Target Start/End: Complemental strand, 27128046 - 27127983
Alignment:
Q  578 aaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||||||  ||||||||||||||  ||||  ||||||||||| |||| ||||||||||||    
T  27128046 aaacgatgatgtggcagaaggactaaattgaaaacatttacaaactt-aaaggacttatgtgtga 27127983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 534 - 642
Target Start/End: Complemental strand, 43258460 - 43258353
Alignment:
Q  534 ttaaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaact 633  Q
    ||||||||||||||||||||  |||| ||||  ||| |||||||||||||||||||  ||||| ||||||||  |||||||||||||||||||||  |||    
T  43258460 ttaaacgtttttaatttagtcattctgttaacaaaatattacaaaaacgatgatgtcgcagaaagactaaatcgaaaatgtttacaaacttaaaa-cact 43258362  T
Q  634 tatgtgtga 642  Q
    |||||||||    
T  43258361 tatgtgtga 43258353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 560 - 627
Target Start/End: Complemental strand, 40951820 - 40951753
Alignment:
Q  560 attaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||  |||  |||||||||||||||    
T  40951820 attaaccaaacattacaaaaacgatgatgtgacagaaggactaaatcgaaagcgtttacaaacttaaa 40951753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 535 - 640
Target Start/End: Original strand, 4048335 - 4048439
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    |||||||||| ||||||||  || | |||| ||||||||||||||| ||||||||   |||| ||||||||  ||||||||||||||||| |||| ||||    
T  4048335 taaacgttttcaatttagtcattttgttaaccaaacattacaaaaatgatgatgtggtagaaagactaaatcgaaaatgtttacaaactt-aaaggactt 4048433  T
Q  635 atgtgt 640  Q
    ||||||    
T  4048434 atgtgt 4048439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 535 - 643
Target Start/End: Complemental strand, 26185960 - 26185855
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    ||||||||||| ||||||  ||||| |||| ||||||||| ||||| ||| |||| ||||||||||||||| |||| | ||||| |||||||||| | ||    
T  26185960 taaacgttttttatttagaccttctgttaaccaaacattataaaaatgataatgtgacagaaggactaaatcaaaact-tttac-aacttaaaag-attt 26185864  T
Q  635 atgtgtgat 643  Q
    |||||||||    
T  26185863 atgtgtgat 26185855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 593 - 642
Target Start/End: Original strand, 11975620 - 11975669
Alignment:
Q  593 agaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    |||||||||||||  ||||| |||||||||||||||| ||||||||||||    
T  11975620 agaaggactaaattgaaaatatttacaaacttaaaaggacttatgtgtga 11975669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 535 - 604
Target Start/End: Original strand, 27280747 - 27280816
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaa 604  Q
    ||||||||||  |||||||  |||  |||| ||||||||||||||||||||||||  |||||||||||||    
T  27280747 taaacgttttcgatttagtcattcagttaaccaaacattacaaaaacgatgatgtggcagaaggactaaa 27280816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 30662219 - 30662279
Alignment:
Q  430 ttaagtttgagattgataacagatttatcttttaagctattttgcttacacataagtcttt 490  Q
    |||||||||||||| |||||||||| ||| |||||  ||||||  ||||||||||||||||    
T  30662219 ttaagtttgagatttataacagattgatcatttaaattattttaattacacataagtcttt 30662279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 561 - 640
Target Start/End: Original strand, 3198370 - 3198448
Alignment:
Q  561 ttaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgt 640  Q
    |||| |||||||||||||||||||||| |  ||||| ||||||||  |||| |||||||||| |||| | ||||||||||    
T  3198370 ttaaccaaacattacaaaaacgatgatctggcagaaagactaaattgaaaacgtttacaaacataaatg-acttatgtgt 3198448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Original strand, 4048218 - 4048262
Alignment:
Q  488 tttgtaatagattaatt--ttaagttattttggtcacacataagt 530  Q
    ||||||||||| |||||  ||||||||||||||||||||||||||    
T  4048218 tttgtaatagactaattctttaagttattttggtcacacataagt 4048262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 537
Target Start/End: Complemental strand, 27280912 - 27280879
Alignment:
Q  504 tttaagttattttggtcacacataagtacgttaa 537  Q
    ||||||||||||||||||||||||||||| ||||    
T  27280912 tttaagttattttggtcacacataagtactttaa 27280879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 595 - 627
Target Start/End: Complemental strand, 44293927 - 44293895
Alignment:
Q  595 aaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||||| ||||||||||||||||||||    
T  44293927 aaggactaaatagaaaatgtttacaaacttaaa 44293895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 535 - 642
Target Start/End: Complemental strand, 52913355 - 52913249
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    ||||||||||  ||||||| ||||| |||| ||||||||||||||||||||||||  ||||| ||||||||  |||| |||||||||||| |||| ||||    
T  52913355 taaacgttttctatttagtccttctgttaaccaaacattacaaaaacgatgatgtggcagaatgactaaatcgaaaacgtttacaaactt-aaaggactt 52913257  T
Q  635 atgtgtga 642  Q
    ||||||||    
T  52913256 atgtgtga 52913249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 537 - 627
Target Start/End: Complemental strand, 1173223 - 1173133
Alignment:
Q  537 aacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||| ||||||||  |||| |||| ||||||||||||||||||||||||  ||||| ||||||||  ||||||||||||||||||||    
T  1173223 aacgttttcaatttagtctttctgttaaacaaacattacaaaaacgatgatgtggcagaatgactaaatcgaaaatgtttacaaacttaaa 1173133  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 627
Target Start/End: Complemental strand, 2633360 - 2633268
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    ||||| |||||||||||||  || | |||| ||||||||||||||||||||||||   |||| ||||||||  ||||||||||||||||||||    
T  2633360 taaacatttttaatttagtcattatgttaaccaaacattacaaaaacgatgatgtagtagaatgactaaatcgaaaatgtttacaaacttaaa 2633268  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 583 - 639
Target Start/End: Original strand, 33650570 - 33650626
Alignment:
Q  583 atgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtg 639  Q
    |||||||  |||||||||||||| ||||| ||||||||||||||||| |||||||||    
T  33650570 atgatgtggcagaaggactaaatcaaaaacgtttacaaacttaaaaggacttatgtg 33650626  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 556 - 642
Target Start/End: Complemental strand, 18981184 - 18981099
Alignment:
Q  556 ttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||| ||||||||||||||| ||| ||||   |||| ||| ||||  ||||||||||||||||| |||| ||||||||||||    
T  18981184 ttctattaaccaaacattacaaaaatgataatgtggtagaaagacgaaatcgaaaatgtttacaaactt-aaaggacttatgtgtga 18981099  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 535 - 587
Target Start/End: Complemental strand, 41007477 - 41007425
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgat 587  Q
    |||||||||| ||||||||  |||| |||||||||||||||||||| ||||||    
T  41007477 taaacgttttcaatttagtcattctgttaatcaaacattacaaaaatgatgat 41007425  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 591 - 643
Target Start/End: Original strand, 52913329 - 52913380
Alignment:
Q  591 acagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    |||||||||||||||| |||| |||||||||||| |||| |||||||||||||    
T  52913329 acagaaggactaaatagaaaacgtttacaaactt-aaaggacttatgtgtgat 52913380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 40892487 - 40892451
Alignment:
Q  560 attaatcaaacattacaaaaacgatgatgttacagaa 596  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  40892487 attaaccaaacattacaaaaacgatgatgtgacagaa 40892451  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 535 - 621
Target Start/End: Original strand, 24059798 - 24059884
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaa 621  Q
    |||||||||||||| |||| |||||||||| ||||  ||||||||| ||||||||  |||||||||||||| ||||| |||||||||    
T  24059798 taaacgtttttaatctagtccttctattaaccaaaagttacaaaaatgatgatgtggcagaaggactaaatcaaaaacgtttacaaa 24059884  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 535 - 643
Target Start/End: Complemental strand, 35225613 - 35225506
Alignment:
Q  535 taaacgtttttaatttagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaactt 634  Q
    ||||||| || |||||||| ||| | ||||  |||||||||||||| ||||||||  ||||||| ||||||  |||| |||||||||||| |||||||||    
T  35225613 taaacgtattcaatttagtccttttgttaactaaacattacaaaaatgatgatgtggcagaaggcctaaatcgaaaacgtttacaaactt-aaagaactt 35225515  T
Q  635 atgtgtgat 643  Q
    |||||||||    
T  35225514 atgtgtgat 35225506  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 577 - 639
Target Start/End: Complemental strand, 9982843 - 9982782
Alignment:
Q  577 aaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtg 639  Q
    ||||||||||||| |||||||||||||||  |||| ||||||||||||||||| |||||||||    
T  9982843 aaaacgatgatgtgacagaaggactaaattgaaaacgtttacaaacttaaaag-acttatgtg 9982782  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 556 - 642
Target Start/End: Original strand, 364139 - 364226
Alignment:
Q  556 ttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaat--aaaaaatgtttacaaacttaaaagaacttatgtgtga 642  Q
    ||||||||| ||||| ||||||||| ||||||||  || |||||||||||  |||| || |||||||||||||||| ||||||||||||    
T  364139 ttctattaaccaaacgttacaaaaatgatgatgtggcataaggactaaatcgaaaatatttttacaaacttaaaag-acttatgtgtga 364226  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 364258 - 364215
Alignment:
Q  488 tttgtaatagattaat-tttaagttattttggtcacacataagt 530  Q
    ||||||||||||| || |||||||||||||||||||||||||||    
T  364258 tttgtaatagattgatctttaagttattttggtcacacataagt 364215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Original strand, 17136920 - 17136964
Alignment:
Q  488 tttgtaatagattaatt--ttaagttattttggtcacacataagt 530  Q
    ||||||| |||||||||  ||||||||||||||||||||||||||    
T  17136920 tttgtaacagattaattctttaagttattttggtcacacataagt 17136964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 579 - 643
Target Start/End: Complemental strand, 2761572 - 2761509
Alignment:
Q  579 aacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgat 643  Q
    ||||||| |||  ||||||||||||||  |||| |||||||||||| |||| |||||||||||||    
T  2761572 aacgatgttgtgtcagaaggactaaattgaaaacgtttacaaactt-aaaggacttatgtgtgat 2761509  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 550 - 645
Target Start/End: Original strand, 2529 - 2623
Alignment:
Q  550 tagttcttctattaatcaaacattacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaaagaacttatgtgtgataa 645  Q
    |||| |||||||||| |||||||||||||||||||||| |   | || || |||||  |||| |||||||||||| ||||||||||||||| ||||    
T  2529 tagtccttctattaaccaaacattacaaaaacgatgatatggtataacgaataaattgaaaacgtttacaaactt-aaagaacttatgtgttataa 2623  T

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Target: scaffold0002 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 12364 - 12322
Alignment:
Q  488 tttgtaatagattaattttaagttattttggtcacacataagt 530  Q
    ||||||||||||| |||||||||||||||| ||||| ||||||    
T  12364 tttgtaatagattgattttaagttattttgatcacatataagt 12322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 530
Target Start/End: Complemental strand, 161726 - 161682
Alignment:
Q  488 tttgtaatagattaat--tttaagttattttggtcacacataagt 530  Q
    ||||||||||||| ||  |||||||||||||||||||||||||||    
T  161726 tttgtaatagattgatcctttaagttattttggtcacacataagt 161682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 627
Target Start/End: Original strand, 21678 - 21734
Alignment:
Q  571 attacaaaaacgatgatgttacagaaggactaaataaaaaatgtttacaaacttaaa 627  Q
    |||||||||| ||||||||  ||||||||||||||  ||| | ||||||||||||||    
T  21678 attacaaaaaagatgatgtggcagaaggactaaattgaaattttttacaaacttaaa 21734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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