View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010-Insertion-7 (Length: 606)
Name: NF3010-Insertion-7
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010-Insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 29731820 - 29732188
Alignment:
| Q |
7 |
acaacactcgttccttaagatctcttaagtcatgatgacaatctttcatatagtagttttaacatattgatggatgcgcaaaggagaacaaaatgaagaa |
106 |
Q |
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| T |
29731820 |
acaacactcgttccttaagatctcttaagtcatgatgacaatctttcatatagtagttttaacatattgatggatgcgcaaaggagaacaaaatgaagaa |
29731919 |
T |
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| Q |
107 |
caagaccttgaaacaatccaaatcagacaactttctggtcgcgctatactttttacgagagtatcaaggtgatttttgttccgggtatagtcattataga |
206 |
Q |
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| T |
29731920 |
caagaccttgaaacaatccaaatcagacaacattctggtcgcgctatactttttacaagagtatcaatgtgatttttt---cgggtatagtcattataga |
29732016 |
T |
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| Q |
207 |
agttttggtgaggcaaaatgagacaaggaatgaagattgtagtgagtcaacaattggaagaagcacgggtgtttaaatagtgtttaaacgtgagttcatg |
306 |
Q |
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| T |
29732017 |
agttttggtgaggcaaaatgagacaaggaatggagattgtagtgagtcaacaattggaagaagcacgggtgtttaaatagtgtttaaacgtgagttcatg |
29732116 |
T |
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| Q |
307 |
acaagttaaaaagtaagattttaatgcgttcaacaaataaacgagtcaatttatgtgtttcctcgttgtttg |
378 |
Q |
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| T |
29732117 |
acaagttaaaaagtaagattttaatgggttcaacaaataaacgagtcaatgtatatgtttccccgttgtttg |
29732188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 415 - 485
Target Start/End: Original strand, 29732190 - 29732260
Alignment:
| Q |
415 |
agatattgtggaaattaatagcatcggaagttatcttcgaatacctaaataaggaactgtttctgtgtgtt |
485 |
Q |
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| T |
29732190 |
agatattgtgaaaattaatagcatcggaagttatcttcgaatacctaaacaagggactatttctgtgtgtt |
29732260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 481 - 533
Target Start/End: Original strand, 29733107 - 29733159
Alignment:
| Q |
481 |
gtgttgagccaaggacccaaggcatgccaaagcgaacttaaaccaatgcgcca |
533 |
Q |
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| T |
29733107 |
gtgttgagccaaggacccaaggcatgccaaagcgaacttaaaccaatgcgcca |
29733159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 537 - 606
Target Start/End: Original strand, 29733227 - 29733296
Alignment:
| Q |
537 |
acccactcgtgaacgggcttggtcataggctaataaccatcttcgacactgcatagttatgtatgactgt |
606 |
Q |
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| T |
29733227 |
acccactcatgaccgagcttggtcataggctaataaccatcttcgacactgtataattatgtatgactgt |
29733296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 366
Target Start/End: Original strand, 31927461 - 31927540
Alignment:
| Q |
287 |
tgtttaaacgtgagttcatgacaagttaaaaagtaagattttaatgcgttcaacaaataaacgagtcaatttatgtgttt |
366 |
Q |
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| T |
31927461 |
tgtttaaacatgtattcttgacaaatcaaaaagtaagattttgatgtgttcaaccaagaaacgtgtcaatgtatgtgttt |
31927540 |
T |
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