View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3010-Insertion-8 (Length: 515)
Name: NF3010-Insertion-8
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010-Insertion-8 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 515
Target Start/End: Complemental strand, 18011954 - 18011448
Alignment:
| Q |
8 |
acaatttgttggaaaaaattcataaggtgattcaactatatactacaattgaggaatttaataatgannnnnnnnnagggcattgctagatttatgttag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18011954 |
acaatttgttggaaaaaattcataaggtgattcaactatatactacaattgaggaatttaataatgatttttttt-agggcattgctagatttatgttag |
18011856 |
T |
|
| Q |
108 |
actacattttttacaacatataaaaccttatgatttatgtggtacttattttaannnnnnnaaatcttaggacattcagggattaaatgtatatgacatt |
207 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18011855 |
actacatttttcacaacatataaaaccttatgatttatgtggtacttattttaatttttttaaatcttaggacattcagggattaaatgtatatgacatt |
18011756 |
T |
|
| Q |
208 |
ctggaatcatgttatcatggtggagagaataaaacatcaaattctaaattgccattaagctttaggcaattgggtaagactgataaatctcttcctataa |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18011755 |
ctggaaccatgttatcatggtggagagaataaaacatcaaattctaaattgccattaagctttaggcaattgggtaagactgataaatctcttcctataa |
18011656 |
T |
|
| Q |
308 |
ggaaaagaatgtttggacgtgcttggccctatagagctattgtaaaagatggatttgtgccatcttggccagaacttgtaagcaatagtaacactgctcc |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
18011655 |
ggaaaagaatgtttggacgtgcttggccctatagagctattgtaaaagatggatttgtgccatcttggccagaacttgtaagcaatagtgacactgctcc |
18011556 |
T |
|
| Q |
408 |
tccttgcattgtaagttatttttctacttaatttacttctttaaaattcaatattttatttttacttcctagctctttaattgacttttgtttatatgat |
507 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18011555 |
tccttgcattgtaagttacttttctacttaatttacttctttaaaattcaatattttatttttacttcctagctctttaattgacttttgtttatttgat |
18011456 |
T |
|
| Q |
508 |
taatggag |
515 |
Q |
| |
|
|||||||| |
|
|
| T |
18011455 |
taatggag |
18011448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 243 - 439
Target Start/End: Complemental strand, 18020791 - 18020595
Alignment:
| Q |
243 |
atcaaattctaaattgccattaagctttaggcaattgggtaagactgataaatctcttcctataaggaaaagaatgtttggacgtgcttggccctataga |
342 |
Q |
| |
|
|||| ||||||| ||||||||||||||||| |||||||| |||||||||| | || | ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18020791 |
atcatattctaagttgccattaagctttagacaattgggcaagactgatagacctatgcctgtgaggaaaagaatgtttggacgtgcttggccctataga |
18020692 |
T |
|
| Q |
343 |
gctattgtaaaagatggatttgtgccatcttggccagaacttgtaagcaatagtaacactgctcctccttgcattgtaagttatttttctacttaat |
439 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||| ||| ||||||||| |
|
|
| T |
18020691 |
gctattgtgaaagatggatatgtgccatcttggccagaacttgaaagcaatagtggtggtgctcctccttgcgttgtaagttactttactacttaat |
18020595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University