View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010-Insertion-9 (Length: 512)
Name: NF3010-Insertion-9
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010-Insertion-9 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 8 - 511
Target Start/End: Original strand, 30181452 - 30181953
Alignment:
| Q |
8 |
caagaatatatcattattgatataaaataaaaatgtatttacttaaccaaattcgaatacgaacatacgaacttttannnnnnnn---gtaaaagtttgt |
104 |
Q |
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| T |
30181452 |
caagaatatatcattattgatataaaataaaaatttatttacttaaccaaattcgaatacgaacatacgaacttttttttttttttttgtaaaagtttgt |
30181551 |
T |
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| Q |
105 |
tgaacttataaaggtacctttatgtttaccatctccaaagagatgaaccttgtccctaggaggcacaaaagaacccacctgagagaggcttccagcaaag |
204 |
Q |
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| T |
30181552 |
tgaacttataaaggtacctttatgtttgccatctccaaagagatgaaccttgtccctaggaggcacaaaagaacccatctgagagaggcttccagcaaag |
30181651 |
T |
|
| Q |
205 |
tatccagcaaagaggttagcagagatgtaagtgaaaggaatgttagcttcttctatcgctttccttacagccattttgtcatcaaatgttacccttcctg |
304 |
Q |
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| T |
30181652 |
tatccagcaaagaggttagcagagatgtaagtgaaaggaatgttagcttcttctattgctttccttacagccattttgtcatcaaatgttacccttcctg |
30181751 |
T |
|
| Q |
305 |
gctccaatgcatgtcccattcttgctgggtctaggccaaattctgaaggcaagaaacgttagtgtagaaaaaacaaatgagttttatgatattattttag |
404 |
Q |
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| T |
30181752 |
gctccaatgcatgtcccattcttgctgggtctaggccaaattctgaaggcaagaaacgctagtgtagaaaaaacaaatgagttttatgatattattttag |
30181851 |
T |
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| Q |
405 |
tatccatgtatataattatgtcaaattggaaaaagaggaaggtaaccaatcatgttagttgggtcattagatattatatttgcaacggcaatgcactagg |
504 |
Q |
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| T |
30181852 |
tatccatgtatataat----tcaaattgggaaaagaggaaggtaaccaatcatg-taatggggtcattagatattatatttgcaacggcaatgcactagg |
30181946 |
T |
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| Q |
505 |
cttaaga |
511 |
Q |
| |
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||||||| |
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| T |
30181947 |
cttaaga |
30181953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 226 - 368
Target Start/End: Original strand, 11344823 - 11344965
Alignment:
| Q |
226 |
gagatgtaagtgaaaggaatgttagcttcttctatcgctttccttacagccattttgtcatcaaatgttacccttcctggctccaatgcatgtcccattc |
325 |
Q |
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| T |
11344823 |
gagatgtaagtgaaagggattttggcatcctcaattgctttccttatagccattttatcatcaaatgtgactcttcctggttcaagtgcatgtcccatga |
11344922 |
T |
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| Q |
326 |
ttgctgggtctaggccaaattctgaaggcaagaaacgttagtg |
368 |
Q |
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| T |
11344923 |
gagctgggtccatcccaaattctgaaggtaggaaacgctagtg |
11344965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 362
Target Start/End: Original strand, 11308708 - 11308844
Alignment:
| Q |
226 |
gagatgtaagtgaaaggaatgttagcttcttctatcgctttccttacagccattttgtcatcaaatgttacccttcctggctccaatgcatgtcccattc |
325 |
Q |
| |
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||||||||||||||||| ||||| || || || || | |||||||| || |||||| ||||||||||| || |||||||| || | ||| |||||||| |
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| T |
11308708 |
gagatgtaagtgaaagggatgttggcatcctcaattgttttccttatagtcattttctcatcaaatgtgactcttcctggttcaagtgcgtgtcccataa |
11308807 |
T |
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| Q |
326 |
ttgctgggtctaggccaaattctgaaggcaagaaacg |
362 |
Q |
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| T |
11308808 |
gagctgggtccattccaaattctgaaggtaggaaacg |
11308844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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