View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010R-Insertion-1 (Length: 980)
Name: NF3010R-Insertion-1
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010R-Insertion-1 |
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Alignment Details
Target: chr2 (Bit Score: 735; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 735; E-Value: 0
Query Start/End: Original strand, 9 - 932
Target Start/End: Complemental strand, 42209305 - 42208371
Alignment:
| Q |
9 |
atagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggtttagaagaatgagggtttaga------------agaatgaaa |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42209305 |
atagagagtggctgaccattatttgttgtcggtagaggtctttcttactaatctcggtttagaagaatgagggtttagaggagggtttagaagaatgaaa |
42209206 |
T |
|
| Q |
97 |
aggtgaagatgttcattggatactctcctgtaaaac---ccacaccagagaggatcctcttctcatatataatcatatacctccttaaggagttttgaat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42209205 |
aggtgaagatgttcattggatactctcctgtaaaacatcccacaccag-gaggatcctcttctcatatataatcatatacctccttaaggagttttgaat |
42209107 |
T |
|
| Q |
194 |
catttgtttgacaagtaatctctttcccgacatatatttttctatacgcatcggtcatagatcacttattgctttatttttaccttattctaatgaagcg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42209106 |
catttgtttgacaagtaatctctttcccgacatatatttttctatacgcatcggtcataaatcacttattgctttatttttaccttattctaatgaagcg |
42209007 |
T |
|
| Q |
294 |
agaggtgttacgnnnnnnnnnnnnnnnnnnnnnnnnctagattgcccttaaaattcatattcaaagattgaattcaactccaattttgttttcttctttt |
393 |
Q |
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| T |
42209006 |
agaggtgttacgttttttctttcttttgtggtttttctagattgcccttaaaattcatattcaaagattgaattcaactccaattt-gttttcttctttt |
42208908 |
T |
|
| Q |
394 |
cagaacatgacaatgagatgacctgaggaggagaaggaacgttcgtttcaatttcaggaccaccagctgttccacagtccacctatgtggtatgtatcag |
493 |
Q |
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| T |
42208907 |
cagaacatgacaatgagatgacctgacgaggagaaggaacgttcgtttcaatttcaggaccaccagctgttccacagtccacctatgtggtatgtatcag |
42208808 |
T |
|
| Q |
494 |
atacattttctgttctattttctacttataaaatgaaaatttcattacagatctcattgaccatttattcaacaaaatagtagtatataatattgcaggg |
593 |
Q |
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| T |
42208807 |
atacattttctgttctattttctgcttataaaatgaaaatttcattacagatctcattgaccatttattcaacaaaatagtagtatataatattgcaggg |
42208708 |
T |
|
| Q |
594 |
actagacctattaattagaattgaaaagtaaacgtatttttctcaagcattttttgtcacaagaaaatttaaaacgcagaatatatgatcacaaaatgtc |
693 |
Q |
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| T |
42208707 |
actagacctattaattagaattgaaaagtaaacgtatttttctcaagcattttttgtcacaagaaaatttaaaacgcagaatatatgatcacaaaatgtc |
42208608 |
T |
|
| Q |
694 |
atagtgggtataaaataattgcatcaagcaattgcaaatttgcaatgacttagttgaccaaatgctttgaaaaagtgcagttattgaacaaaataaaact |
793 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42208607 |
atagttggtataaaataattgcatcaagcaattgcaaatttgcaatgacttagttgaccaaatgctttgaaaaagtgcagttattgaacaaaataaaact |
42208508 |
T |
|
| Q |
794 |
caacgtaacgaggttaattagtctgagtggaactgaactaagattccttggataagattaaagccttgaac-ttgtagataaaggtg-tcttgggtagaa |
891 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| |
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| T |
42208507 |
c-----aacgaggttaattagtctgagtggaactgaactaagattccttggataagattaaagctttgaactttgtagataaaggtgttcttgggtagaa |
42208413 |
T |
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| Q |
892 |
tag-aattagacattgacaaaaagtcggtgaaatgttcgcac |
932 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42208412 |
tagaaattagacattgacaaaaagtcggtgaaatgttcgcac |
42208371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 338 - 468
Target Start/End: Complemental strand, 42215979 - 42215850
Alignment:
| Q |
338 |
cccttaaaattcatattcaaagattgaattcaactccaattttgttttcttcttttcagaacatgacaatgagatgacctgaggaggagaaggaacgttc |
437 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||| |||||||||||| |
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| T |
42215979 |
cccttgaaattcatattcaaagattgaattcaactccaattttgttttcttcttttcagaacatgacactgagttgacccgaggaggtgaaggaacgttc |
42215880 |
T |
|
| Q |
438 |
gtttcaatttcaggaccaccagctgttccac |
468 |
Q |
| |
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| T |
42215879 |
gtttcaatttc-ggaccaccagctggtccac |
42215850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 733 - 786
Target Start/End: Complemental strand, 42215632 - 42215577
Alignment:
| Q |
733 |
ttgcaatgacttagttgaccaaatgctttgaaaaagtg--cagttattgaacaaaa |
786 |
Q |
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|||||||||||||||||||||| ||||||||||||| | |||| ||||||||||| |
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| T |
42215632 |
ttgcaatgacttagttgaccaactgctttgaaaaagagcacagtaattgaacaaaa |
42215577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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