View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3010R-Insertion-3 (Length: 950)

Name: NF3010R-Insertion-3
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3010R-Insertion-3
NF3010R-Insertion-3
[»] chr6 (1 HSPs)
chr6 (8-948)||(26579704-26580654)
[»] chr3 (1 HSPs)
chr3 (515-600)||(29258758-29258843)


Alignment Details
Target: chr6 (Bit Score: 762; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 8 - 948
Target Start/End: Complemental strand, 26580654 - 26579704
Alignment:
Q  8 agattcatcttttgatatatggaaaaatattaatgatgctattactcatgaaggtttcaaatctcatagtgatggtttttcatcttcgataagaaatagt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26580654 agattcatcttttgatatatggaaaaatattaatgatgctattactcatgaaggtttcaaatctcatagtgatggtttttcatcttcaataagaaatagt 26580555  T
Q  108 actctacaaaaaactgatacagaactttcattatcgaattccaaaacaaaaacaactactttttctgaagctgagagtgtttggaagagaaaaaacttag 207  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26580554 actctacaaaaaactgatacagaactttcattatcaaattccaaaacaaaaacaactactttttctgaagctgagagtgtttggaagagaaaaaactttg 26580455  T
Q  208 ttagattaagacccttcaatggaatccctctttatagtgataacaatccttctataataaagaaagattcaaactcttctctatatccttcttgttcagc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||    
T  26580454 ttagattaagacccttcaatggaatccctctttatagtgataacaatccttctataatagagaaagattcaaactcttctctatatccttcttgttctgc 26580355  T
Q  308 tagttcttcaactttttcaaggtttaatgggataactatagagagtttaagacctcaaaagtttcaatatatgaatcatcaacatcatcttctacagcat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||          
T  26580354 tagttcttcaactttttcaaggtttaatgggataactatagagagtttaagacctcaaaagtttcaatacatgaatcatcagcatcatcttcta------ 26580261  T
Q  408 cagcatcaacaacagcagaaggtgaatcagtttggaaattctgagtttggaagtggatttgtgaggtcaagaatgatgatgccaaggcaacaaagtaata 507  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26580260 cagaatcaacaacagcagaaggtgaatcagtttggaaattctgagtttggaaatggatttgtgaggtcaagaatgatgatgccaaggcaacaaagtaata 26580161  T
Q  508 agaggaacatgagggctccgagaatgcgatggactagttcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagtatatctct 607  Q
    ||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26580160 agaggaacatgagggctccaagaatgcggtggactagctcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagtatatctct 26580061  T
Q  608 tctcttgttaaatctctcccttttaatatgagtatagatcatctgcaccagtataataggattgtcggtttgtatgtttagattgacagtgaatttgaca 707  Q
    |||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26580060 tctcttattgaatctctcccttttaatatgagtatagatcatcggcaccagtataataggattgtcggtttgtatgtttagattgacagtgaatttgaca 26579961  T
Q  708 aaatctcagagttaaaactttgaagaaaagtttttaaaagaaattggataatttactctgatactatc-atttcattgtcaatctaaacatacactttat 806  Q
    ||||||||||| ||||||  | ||  ||||||||||||||||||||||||| |||||||||| ||||| || ||| ||||||||||||| ||||||||||    
T  26579960 aaatctcagagataaaaccctcaaataaagtttttaaaagaaattggataacttactctgattctatcaatctcactgtcaatctaaacctacactttat 26579861  T
Q  807 c----------------gatctgagtgtgaatactatactatacatctatatctatataaagtaaatttttgaactctcatgtatttttcttttgaattt 890  Q
    |                |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579860 cgatctgagtgtcgttggatctgagtgtgaatactatactatacatctatatctatataaagtaaatttttgaactctcatgtatttttcttttgaattt 26579761  T
Q  891 tgggatggtaggagctactcctaaatcagttttggagctaatggatgtgaaagatcta 948  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26579760 t-ggatggtaggagctactcctaaatcagttttggagctaatggatgtgaaagatcta 26579704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 515 - 600
Target Start/End: Original strand, 29258758 - 29258843
Alignment:
Q  515 catgagggctccgagaatgcgatggactagttcgcttcataatcgatttgttcacgccgttgagcttctcggcggccatgaaagta 600  Q
    |||||| || || |||||||||||||| ||| | ||||||  | |||||||||| || ||||||||||| || |||||||||||||    
T  29258758 catgagagcaccaagaatgcgatggacaagtactcttcatgctagatttgttcatgctgttgagcttcttggtggccatgaaagta 29258843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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